Ahis013407.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388162.1:1824061-1829381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.1e-06 0.00013 22.4 0.6 1 23 125 147 125 147 0.98 2 11 0.00024 0.015 16.0 1.4 1 23 156 178 156 178 0.98 3 11 1.9e-05 0.0012 19.4 1.0 1 23 187 210 187 210 0.95 4 11 0.0085 0.53 11.1 0.8 1 23 224 247 224 247 0.93 5 11 3.5 2.2e+02 2.8 0.4 15 23 255 264 253 264 0.90 6 11 2.8e-06 0.00018 22.0 1.0 1 23 271 293 271 293 0.98 7 11 0.021 1.3 9.8 0.8 1 23 299 322 299 322 0.90 8 11 3.5e-06 0.00022 21.7 4.3 1 23 328 350 328 350 0.97 9 11 0.00047 0.029 15.0 0.8 2 23 374 395 373 395 0.96 10 11 8.4e-05 0.0053 17.4 2.2 3 23 402 422 401 422 0.97 11 11 0.049 3.1 8.7 0.3 1 23 428 451 428 451 0.90
Sequence Information
- Coding Sequence
- ATGCATAGACATCTTTTCAACATCGCGCTGGAGCATCAGGCAGTCCTCCCCAGACTTTACTTCAATGAACAACTTCAGATCGACAGCGTACAAGAGACATTTAAGACAACTGGAACAATAACCACACCTCAATATATCTGTTCCTGTATTAGAGGGACACATGCGGATGAGATAATATCATCACACAATGTTAGAAAGCACAATGCATGCGGCATCGTAGCCCTAGAAATAGACAAGGTACAACTATTTGAAGTACCCATAAAGCAAGATTCGAAGCAAGACCTGTCGGATAATGAGCCCCTGAGTGAAAAGAAAAATATTCCAAAAATAGGTTTGGGAAATAGAAAAAAATTGAGCAACATAAGCCGCCCATTTTCTTGTGATGTTTGCGGAAAGCGAGTAACAACAAAATATAAATTACAAGCGCATTTAGAGACGCACAAACCAAAGGAGAAGCGACAAATATTTGAATGTGCACATTGCAGTAAGATGTTCAAAAATAGACCTGCATTTGTGATGCATTTAGATACGCACAAACCAAAAGAAGACCGAAAAACATTTGAATGTGCACATTGCAATCAGATGTTCACGAGAAAAAATGCATTAATGACCCATATTATTAATATCCACCCAGAGGAGGTGTCTGTAGCTGTCAAGTCGAGTAAATTGTTCCCATGCGACCTGTGTACGAAGATCTATCATCAAAAGATAAAATTACGGGATCACTTGAGTGCTGCCCATGCAGGAAGTTTCGCTGAAACATACCTTCAGAACCACATTAGAACAAGGCACCAGACTGATACCCTACCGTACAAGTGCGAGTCGTGCGACCGAAAATTTATATCAAAATCACTATTAAACCGGCATGTCAGCGTGCATTCTGGGGCCAAGCCGCACTCCTGCGACATTTGTGATGCTAAGTTCAGGCTCAAATATAGCGTAAGGTTACACAAGGCAGAAGTGCACGAGAAAGCCAAGAACCACGTCTGTCACATTTGCCCCAAGCGGTATTTCACTTCATCCCTTTTGCAGCGTCATATCAGGAATCATTCTAAACCTGTCAACGACAAGCCCGGCGACAGACCTGTGGCCATCAAAAGAGAGATCGTCAAAACAGTGACTTGTCCAGATTGCGGAAAACCTATGGCCAGCAAGCGAACTCTGAAACACCATCGCTTGTTGCACAAGGGTCTACAGAACCACTGTGAACTCTGCGGACTGACTTTTGCGACGCGCAAGTACGTCCTCAGACACATGAAGACACATAACCAAATTAGGAATTTTTTATGCAAATTCTGTAATGCTGCTTTCATACAAAGCGGCGCGAGACGCAGGCACGAGCTAAACGTCCACATAATGGCAGGCGAGAAGAGACCACCAAGGAAAGACACAAGGAAAAAGAGAATTAGAAAAAAGAAGTTGACAGCAGGAGTGGAAGTGCCAAATGTGCCAATTGAAAATGTCAATGTGCCTGCGCCTGGGCAGTCACAGGGGTTTAGTCAAGGTTTGTGCATTTTCCCCATTTCTGGTCCGTTTAAAACTGAAGAGGATATGTCGCCATACGTATGA
- Protein Sequence
- MHRHLFNIALEHQAVLPRLYFNEQLQIDSVQETFKTTGTITTPQYICSCIRGTHADEIISSHNVRKHNACGIVALEIDKVQLFEVPIKQDSKQDLSDNEPLSEKKNIPKIGLGNRKKLSNISRPFSCDVCGKRVTTKYKLQAHLETHKPKEKRQIFECAHCSKMFKNRPAFVMHLDTHKPKEDRKTFECAHCNQMFTRKNALMTHIINIHPEEVSVAVKSSKLFPCDLCTKIYHQKIKLRDHLSAAHAGSFAETYLQNHIRTRHQTDTLPYKCESCDRKFISKSLLNRHVSVHSGAKPHSCDICDAKFRLKYSVRLHKAEVHEKAKNHVCHICPKRYFTSSLLQRHIRNHSKPVNDKPGDRPVAIKREIVKTVTCPDCGKPMASKRTLKHHRLLHKGLQNHCELCGLTFATRKYVLRHMKTHNQIRNFLCKFCNAAFIQSGARRRHELNVHIMAGEKRPPRKDTRKKRIRKKKLTAGVEVPNVPIENVNVPAPGQSQGFSQGLCIFPISGPFKTEEDMSPYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -