Ahis012355.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388172.1:1262292-1271909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.058 3.7 8.4 0.5 2 19 12 29 12 32 0.94 2 20 0.082 5.1 8.0 3.5 2 23 82 104 81 104 0.94 3 20 0.013 0.79 10.5 0.1 2 23 137 159 136 159 0.94 4 20 0.0016 0.1 13.3 0.3 1 23 180 203 180 203 0.96 5 20 0.0029 0.18 12.5 2.2 1 23 249 271 249 271 0.97 6 20 0.17 11 6.9 0.4 2 23 296 317 295 318 0.93 7 20 0.025 1.5 9.6 1.6 2 23 339 361 338 361 0.96 8 20 0.00014 0.0089 16.6 0.1 1 23 366 389 366 389 0.98 9 20 0.028 1.7 9.4 1.0 2 23 395 417 394 417 0.90 10 20 6.6e-05 0.0041 17.7 0.8 2 23 420 442 420 442 0.97 11 20 0.25 15 6.5 0.4 2 20 449 467 448 469 0.92 12 20 0.023 1.4 9.7 0.7 1 23 522 545 522 545 0.96 13 20 0.76 48 4.9 0.5 3 23 574 595 572 595 0.91 14 20 0.013 0.8 10.5 0.0 2 21 620 639 619 642 0.89 15 20 0.00059 0.037 14.7 0.2 2 23 648 670 648 670 0.94 16 20 0.0018 0.11 13.2 2.4 2 23 675 697 674 697 0.95 17 20 0.034 2.2 9.1 0.4 1 23 702 725 702 725 0.96 18 20 2e-05 0.0012 19.3 3.9 1 23 729 752 729 752 0.97 19 20 0.0072 0.45 11.3 2.8 2 23 759 780 758 780 0.96 20 20 1.5e-05 0.00092 19.7 1.0 1 23 786 808 786 808 0.98
Sequence Information
- Coding Sequence
- ATGAAGACTGAGCATAATGTATCTCAAGGTGGCACTTGCGGTTTTTGTCACAAGGAATTTGATTCGAGGGCTAGTTTTTTAGCTCACGCCGGCAAGTGCTCTGCTGGAGACCGAAGTAAGATAGAAGTAGATGAAATAGTAGCAGAGGCTAACATGGACACTTTGAAAGTTGTGAGGAAAAAAAATGCCTTCATATTTAATAATACTACGATAATTCCTTTTAAGTTTTACCATAATAGGATCCAATGCTTTTACTGCTCAGAAAAGTTCATAAGCTGTACAGATTTCAGGACTCATTCGACAACAGAGCATTTCAGGTGTGATGCCAAGACGGACCTTGATAAATATCCTCTCCAGCATCTTGTCAAAAGTGATGCAATGTTGATAAAAGTTGATTCTTCCTTATTAGAGTGCAAAATATGTAAAAGCCAATTCGAGGATTTGAAATCCTTGCTAGCTCATTTGGAAATAGAACACAAGGCGAAACTTGGAAACTGCGCTGACAAATTCCTACCTTTCAAACTAGTGGATGACCACTACCCGTGTCCACAGTGCGGTGAAGAATTCACGCTATTTGGCAACATGTTCAATCATTTCAACAAAGTACATAATACGTCGCACAGGGCTCTATGCATATACTGTGATCGGACATCGGAGCAGTCCGCTAACGCAGAAACAATGCAGACCAACTTGAAAGTATTGTTTAATCATACGACCATAATCCCTTTCAAGTGGAAAACAAAGTACGCCTGCTACTACTGTAACGAAACATACACCGAATATGCAATGTTCAGAAAGCACACAAAATCCCACGGGCGTTGCTCGAAGAAGACCCTAAAACGTATAAAAAATTATCGAGTAGTTTCTATAGACGTGTCTGAAATCGTTTGTGAGCTATGCCAGACTCAATTCAAAAGTCGAGCCGTTGTAGTCGACCATTTGATCAAACATCATTCTAAATTGTACAATAAGAATGTTAGTATAGTATTTGAAGAGTACAGATTAAACGATCTCAGGTGTCTGATTTGCGATCAACATTTTAGTAGCTTTAAAATTTTAGCACGACACGTGCGTAGCTCTCATTCGAAGGATCGCTACGAATGCAACGACTGCGGTAGATGGTTTACCACTGCTGCTAACATATCAATGCATATTAGGATGAACCACGCTGCGAGCGTGTTTGATTGCATCCAGTGTAGTAAAAAGTTTATAGGTGAAGCGCATTTGAAGAAACATGTTCTTCGTGCACATTTGCGTCAATGTACTCTATGCGATGCGAAGTTTAAATATGCGGGTAGTCTGAAAAAGCATATCATGAAACAGCACACCGATGATAGATGTACAAAATGCACTTATTGCTCTAAAGAGCTGCCTTCGGCTACGGAAATGGAACACCATGAATCTAGATGTGAACTTAAAGAACTTAACCAAGTCGATACTAATGATGACGACCGGCTCTCGAACAAGAGATTAAAAAGGAACGCTCTCTGTAACCAAATCAGGCGAAATATTCAATGTGTTTTAAACATGTCCACCGCAGTGCCATTTAAATTCAAAGGAAAGTTTAGCTGTTTCTATTGTTCGCAATGGTTTTCCAACTTCGACGAACTGATTTCACATACTCGAGCGGAACACCCGGTTTGTGAGCTGAAATCGAAGGCAATGCAGACATGCAAAGGCGAAAAGGCTTGCATTAAGTTAGATATAAATGATCTAGCTTGCAAATTATGTCATAAACCTATGTCAGATCTGAAAAGCTTCGTAGACCACGTCATGGGCCAGCACGGCGCGGACTATGACAAGTCTGTACCGTTTAAAGATTGCTTCGAAACTTTCCACCTCACTCAAGGCAGGATTCCGTGCCCGGAATGTCAGGAGCCTTTCGCGTATTTCGCGACATTGCTGAAGCATTTAGGCGCCGAGCACAACCATCACAAAGCGGTTTGCGCTTACTGCGGTCGAGGTTTCCGTACCACAACCAGTTTGGCGATGCACATATCCAACTCTCACACAGGGATGTGTGAATGTAGTGTATGCAATGCTAAATGCAAGAACTCTGCAGCTCTAGCGCGGCACATGGCCCGATTCCACGACGCAAAAGACTTCAAATGTCCTCAGTGTCCTGAGCTATTCGAGACCATATACAAGAAGCAGAATCATTTAATTAAAGCTCACAACGTTGGACACAAATGTGCGTATTGCGGGAAGATGTTTACAAGGAATTCGTTCATGATGAATCATGTAAGGCGGACGCATTTGAAAGAACGGACCGTGCCTTGTTCTGTGTGCCACGTGAAGTTCTTCGATAGCTACCACATGAAGCTTCACATGGTCAAACACGAGGGCATGAGGCGGTTCAGGTGCGAGGTTTGTGGGAAAACTTTTCTGAGAGTAAGAAATTTGAAATCCCACATGGATACGCATAAGAAGGGATATTTACAGGAAGGAATAAAATAG
- Protein Sequence
- MKTEHNVSQGGTCGFCHKEFDSRASFLAHAGKCSAGDRSKIEVDEIVAEANMDTLKVVRKKNAFIFNNTTIIPFKFYHNRIQCFYCSEKFISCTDFRTHSTTEHFRCDAKTDLDKYPLQHLVKSDAMLIKVDSSLLECKICKSQFEDLKSLLAHLEIEHKAKLGNCADKFLPFKLVDDHYPCPQCGEEFTLFGNMFNHFNKVHNTSHRALCIYCDRTSEQSANAETMQTNLKVLFNHTTIIPFKWKTKYACYYCNETYTEYAMFRKHTKSHGRCSKKTLKRIKNYRVVSIDVSEIVCELCQTQFKSRAVVVDHLIKHHSKLYNKNVSIVFEEYRLNDLRCLICDQHFSSFKILARHVRSSHSKDRYECNDCGRWFTTAANISMHIRMNHAASVFDCIQCSKKFIGEAHLKKHVLRAHLRQCTLCDAKFKYAGSLKKHIMKQHTDDRCTKCTYCSKELPSATEMEHHESRCELKELNQVDTNDDDRLSNKRLKRNALCNQIRRNIQCVLNMSTAVPFKFKGKFSCFYCSQWFSNFDELISHTRAEHPVCELKSKAMQTCKGEKACIKLDINDLACKLCHKPMSDLKSFVDHVMGQHGADYDKSVPFKDCFETFHLTQGRIPCPECQEPFAYFATLLKHLGAEHNHHKAVCAYCGRGFRTTTSLAMHISNSHTGMCECSVCNAKCKNSAALARHMARFHDAKDFKCPQCPELFETIYKKQNHLIKAHNVGHKCAYCGKMFTRNSFMMNHVRRTHLKERTVPCSVCHVKFFDSYHMKLHMVKHEGMRRFRCEVCGKTFLRVRNLKSHMDTHKKGYLQEGIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -