Basic Information

Insect: Apocheima hispidaria
Gene Symbol: -
Assembly: GCA_947579745.1
Location: OX388172.1:1285375-1293121[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.5 31 5.5 8.2 1 23 95 118 95 118 0.96

2 24 0.51 32 5.5 0.2 2 20 147 165 146 166 0.92

3 24 0.014 0.85 10.4 0.7 2 23 192 214 191 214 0.93

4 24 0.0002 0.013 16.2 0.3 1 19 219 237 219 238 0.96

5 24 4.6e-06 0.00029 21.3 0.6 1 23 246 269 246 269 0.96

6 24 0.0095 0.6 10.9 0.9 1 23 274 297 274 297 0.97

7 24 0.015 0.92 10.3 4.9 1 23 306 329 306 329 0.97

8 24 0.13 7.9 7.4 0.7 2 23 336 357 336 357 0.96

9 24 4.2 2.6e+02 2.6 2.6 3 23 405 425 403 425 0.96

10 24 0.23 14 6.6 0.7 2 16 453 467 452 475 0.87

11 24 0.021 1.3 9.8 0.6 2 23 496 518 495 518 0.96

12 24 3e-06 0.00019 21.9 1.9 1 23 523 546 523 546 0.96

13 24 7.6e-05 0.0048 17.5 0.8 1 23 550 573 550 573 0.95

14 24 0.46 29 5.6 0.7 2 23 576 598 575 598 0.93

15 24 0.45 28 5.6 1.0 2 19 605 622 605 625 0.92

16 24 0.0016 0.099 13.4 3.1 1 23 707 730 707 730 0.93

17 24 1 63 4.5 0.2 3 23 761 782 759 782 0.94

18 24 0.0031 0.19 12.4 0.5 1 23 803 826 803 826 0.95

19 24 0.028 1.8 9.4 0.6 3 21 834 852 833 853 0.93

20 24 2e-05 0.0012 19.3 0.9 1 23 861 884 861 884 0.95

21 24 0.0022 0.14 12.9 2.0 1 23 889 912 889 912 0.97

22 24 0.00063 0.039 14.6 2.0 1 23 916 939 916 939 0.97

23 24 4.7e-05 0.003 18.2 1.2 2 23 946 967 946 967 0.96

24 24 8.1e-06 0.00051 20.6 0.8 1 23 973 995 973 995 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.5	31	5.5	8.2	1	23	95	118	95	118	0.96
2	24	0.51	32	5.5	0.2	2	20	147	165	146	166	0.92
3	24	0.014	0.85	10.4	0.7	2	23	192	214	191	214	0.93
4	24	0.0002	0.013	16.2	0.3	1	19	219	237	219	238	0.96
5	24	4.6e-06	0.00029	21.3	0.6	1	23	246	269	246	269	0.96
6	24	0.0095	0.6	10.9	0.9	1	23	274	297	274	297	0.97
7	24	0.015	0.92	10.3	4.9	1	23	306	329	306	329	0.97
8	24	0.13	7.9	7.4	0.7	2	23	336	357	336	357	0.96
9	24	4.2	2.6e+02	2.6	2.6	3	23	405	425	403	425	0.96
10	24	0.23	14	6.6	0.7	2	16	453	467	452	475	0.87
11	24	0.021	1.3	9.8	0.6	2	23	496	518	495	518	0.96
12	24	3e-06	0.00019	21.9	1.9	1	23	523	546	523	546	0.96
13	24	7.6e-05	0.0048	17.5	0.8	1	23	550	573	550	573	0.95
14	24	0.46	29	5.6	0.7	2	23	576	598	575	598	0.93
15	24	0.45	28	5.6	1.0	2	19	605	622	605	625	0.92
16	24	0.0016	0.099	13.4	3.1	1	23	707	730	707	730	0.93
17	24	1	63	4.5	0.2	3	23	761	782	759	782	0.94
18	24	0.0031	0.19	12.4	0.5	1	23	803	826	803	826	0.95
19	24	0.028	1.8	9.4	0.6	3	21	834	852	833	853	0.93
20	24	2e-05	0.0012	19.3	0.9	1	23	861	884	861	884	0.95
21	24	0.0022	0.14	12.9	2.0	1	23	889	912	889	912	0.97
22	24	0.00063	0.039	14.6	2.0	1	23	916	939	916	939	0.97
23	24	4.7e-05	0.003	18.2	1.2	2	23	946	967	946	967	0.96
24	24	8.1e-06	0.00051	20.6	0.8	1	23	973	995	973	995	0.98

Sequence Information

Coding Sequence: ATGTCTTTATCGTGGGAGAAAACATTAAACTCGTTGACATATCGCGCCAAAACCGAAGGCAGACAAAAGCGATCACGGGAAAAAGAAACCTCAACGAACTTCCCTAAACTTAAACACGAAACCAACAACTCTGACGTTGAAGACGAAGACAACGCTAGGAACATTAATAGTAAACACGACAAAGTCCCCGCCGATAAACTCCAATGTGTCAAAGTCAGGAGAAACTTAGCTTGTATCCTAAACAATTCTACTGCCATCCCCTTTTCGCATGCTAAGAGTAAATTTAACTGTTTCGTTTGCCATGAAGGGTTCCACAGATGCGATTCGTTCCAGCAGCATTTTCGGTCTGAACATTTTACATACAAATTTAGCGTTCTAGACAACATTATCAAACGAGTTAACAAAAATACTTCGTTGAAGTTAGATATCGCCGATTTAAATTGCAAACGTTGCCAACAGCGATTCTACGATTTAAAACCTCTGATCGATCATCTCATTTGCGATCATGGTGTTGAATACGATAAAACTGCGATAGACATTGTTCAGCCGTTCAAACTTAAGGACGAGGATCTTCGATGCCACGTCTGCGACGAAAAGTTTGTGTACTTCATCAAGCTGGTTACACATTTAAATGACGTACACGAGGACAAGAAATATATGTGCGATTTATGCGGGAAATCATTTAAAGATTTGAGTTCGTATAACTTGCACGGTTGGCAAGTCCATGGCCCGGGGTACAACTGCCCTGACTGCGGTAGGCGATGCTCCACCCCATCCCTTTTAAGGGAGCACTTGGCGAGCACTCACGGCAAAGGAAAGTTCAAATGCACCGAGTGCTCAGCTGAATTCACCTCTATATATAAGCGGAAAAAGCATATAATATCTGTTCACCAAGCTAAAGAGGTCCCGGCTTCGTTCAAATGTCCTCACTGTGAAAAAGTTTTCACATGCACGTCGCAAAGGAACGTGCACGTCAGAAAAGTGCACTTGCAGGAGAAGAATGAAGTATGTCCCATTTGTCACGCGGAGTTATTCAATAAGACAAGGTTGAATCTTCATATGGTGAAGCATTTGAGAGAACGGAACCACGTTTGTGATATCTATGTAAACTTCAAACGGATAGTGTTACCGATAGAGCAAAGACGACGGAACCTCGAGATTTTGTTCAACAATACAACGATCGTTCCATTTAAACATCGCGGACAGTGCTTGTGCTTTTTCTGCGGTTTGAAAATGAAAGACCGACAGCAGTTGGTAGACCACAGTCAGACTCACCTACCGTGTAATACTAAACATAACTCGTTGAAAGCTTTGAACGGAGCAGACTTTGAAATCAAAGTGGACGTGTCTGTAATTCAATGTAAAGTTTGCTCCGAAAAATTTAGCAACATTTACAATTTAGGGTTTCATTTGGTCCATAAACATAAACTCTCTTACGACCTGGGCATAGTCCTGGGCTTCCTCGCATATAGATTGGTCGACTTGAAATGCTTGATATGTCTCAAACAGTCGAAGACATTAAGAGGTCTCATTCAGCATATGAACAAGGAGCATCCCGTAAATTACTTCGAATGCGATGATTGTGGCAAAAGATTTAGGAGAAAGCACGATTTGTTAGGTCATATAAATCAGAGACACAATGAAGAGTTTAGATGTCCTAAATGTCCGGTGACTTTCAAAACGAAAGGAGAATATGTAAAACATAAGAATGAAGATCACATCTCCCAATGCAACGTCTGTTTTCAAACATTTTTGTCGTCCGCGTTGCGACTAAAGCATATGAAGGGTGAACATGATATAGCTATGGGCGGTACTTGTGGCTTTTGCTTCAAGAAATTTAAGTCAAGGTTCGCCTTTCTAGATCATGCCGGTAAATGCTCCGTTAAGGGACCTACAAATATAGAGGTATCTCTGACACCAGTCAAGATTGACATCGAGAACGGACCAGTGCCGTTTTCTGGTTCAATCAAGACGGATAAAGAAATGACATCCCCAAACGAGGCAGAGACAGTAACAGCTATGGTTGCAATGCGAGAGGCTAAGAAACTTGCCAGGAGTAGTATTGCCTATGTCTTCAACAATACCACTATCATTCCTTTCAAAAGGTACCACAATAGATTCAGATGCTTCTACTGTCCTAAAGAGTTCAACAGCTGTAACGAACTCAGGAACCATTCAATGGAAGAGCATCCAGTTTGCGATGTTAAGCTTAAATGTATGAAATTGAGCGGATTGGGCTATCAATATATGTGGATTAAGGTCGACTCTTCTTTATTGGCGTGCAAACTATGTCACGACCAATATGAAGATTTAAAAAGCTTGCTAGCTCACTTAGAGATCGAACATGGTGCTAAACTTGGCAACTGCGCTGAAAAATTACTACCTTTTAAACTGATGGATGACCAGTACCCATGTCCACAGTGCGGTGTAGTATTCTCGCATTTCGGTAATACACTGATCCACTTCAACAAGGAACATAACACGGAGAACAGAGTTCTATGCGTGACGTGCGGTGAATCGTTTCACAATTTAACCTCACTTCAGATTCACAAGAATCGCTGTAACGTAGTTCCCGATCGCTTCAAATGTACCAGATGCGACCTGGGATTCTACAATAAGAGCCAATTGACTCGGCATTTGGGCATGGCTCACAAAAAGAAAGTCTTCAAATGCCCACATTGCACCGAATCGTTTGCATCTGAGCATGCCAAAATGGTACACATTAGCAAAGAACACGAAGGCGGTCACCAATGCACTCAATGCGATGCTTCCTTCATATTCCGCTCACGGTTGATCCAGCACGTAAGAAGATTACATCTTCTAGAAAAGAACGAGAAATGTCCTTATTGCGATAAAATGTTTTTTGACCAACGCAGGTTGAAAAATCACATGGTCTTGCACACCGGAGAAAGGGCTTTCAGTTGCGACTATTGCGACAAGACTTTCTCATGGAAAAAGAACCTTATTAGCCATATAAATGTGCATTTAAAGAATGCAGGTCATGATAACAAAAGAAAGGAAAGGAAACAATAG
Protein Sequence: MSLSWEKTLNSLTYRAKTEGRQKRSREKETSTNFPKLKHETNNSDVEDEDNARNINSKHDKVPADKLQCVKVRRNLACILNNSTAIPFSHAKSKFNCFVCHEGFHRCDSFQQHFRSEHFTYKFSVLDNIIKRVNKNTSLKLDIADLNCKRCQQRFYDLKPLIDHLICDHGVEYDKTAIDIVQPFKLKDEDLRCHVCDEKFVYFIKLVTHLNDVHEDKKYMCDLCGKSFKDLSSYNLHGWQVHGPGYNCPDCGRRCSTPSLLREHLASTHGKGKFKCTECSAEFTSIYKRKKHIISVHQAKEVPASFKCPHCEKVFTCTSQRNVHVRKVHLQEKNEVCPICHAELFNKTRLNLHMVKHLRERNHVCDIYVNFKRIVLPIEQRRRNLEILFNNTTIVPFKHRGQCLCFFCGLKMKDRQQLVDHSQTHLPCNTKHNSLKALNGADFEIKVDVSVIQCKVCSEKFSNIYNLGFHLVHKHKLSYDLGIVLGFLAYRLVDLKCLICLKQSKTLRGLIQHMNKEHPVNYFECDDCGKRFRRKHDLLGHINQRHNEEFRCPKCPVTFKTKGEYVKHKNEDHISQCNVCFQTFLSSALRLKHMKGEHDIAMGGTCGFCFKKFKSRFAFLDHAGKCSVKGPTNIEVSLTPVKIDIENGPVPFSGSIKTDKEMTSPNEAETVTAMVAMREAKKLARSSIAYVFNNTTIIPFKRYHNRFRCFYCPKEFNSCNELRNHSMEEHPVCDVKLKCMKLSGLGYQYMWIKVDSSLLACKLCHDQYEDLKSLLAHLEIEHGAKLGNCAEKLLPFKLMDDQYPCPQCGVVFSHFGNTLIHFNKEHNTENRVLCVTCGESFHNLTSLQIHKNRCNVVPDRFKCTRCDLGFYNKSQLTRHLGMAHKKKVFKCPHCTESFASEHAKMVHISKEHEGGHQCTQCDASFIFRSRLIQHVRRLHLLEKNEKCPYCDKMFFDQRRLKNHMVLHTGERAFSCDYCDKTFSWKKNLISHINVHLKNAGHDNKRKERKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -