Ahis004382.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388155.1:834913-837243[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.2e-06 0.0002 21.8 4.0 1 23 6 29 6 29 0.95 2 20 0.00023 0.014 16.0 0.1 2 23 35 57 34 57 0.95 3 20 9.8e-06 0.00061 20.3 0.2 2 23 66 88 66 88 0.97 4 20 3.3e-06 0.00021 21.8 3.3 2 23 97 119 96 119 0.95 5 20 9.6e-06 0.00061 20.3 2.9 2 23 127 149 127 149 0.95 6 20 6.4e-07 4.1e-05 24.0 2.0 2 23 157 179 156 179 0.96 7 20 6.9e-07 4.3e-05 23.9 5.0 1 23 185 208 185 208 0.98 8 20 0.00027 0.017 15.8 0.3 3 23 245 266 244 266 0.95 9 20 0.0027 0.17 12.6 1.4 1 23 296 319 296 319 0.98 10 20 0.21 13 6.7 2.0 2 21 327 346 326 347 0.93 11 20 0.27 17 6.3 0.2 3 23 357 378 356 378 0.89 12 20 0.0057 0.36 11.6 6.1 1 23 402 425 402 425 0.97 13 20 0.00012 0.0077 16.9 0.7 2 23 432 454 431 454 0.96 14 20 0.00011 0.0072 16.9 1.9 2 23 461 483 460 483 0.94 15 20 0.007 0.44 11.3 2.2 1 23 489 512 489 512 0.97 16 20 0.18 11 6.9 7.1 2 23 520 542 520 542 0.95 17 20 0.00035 0.022 15.4 0.1 1 23 549 572 549 572 0.97 18 20 0.011 0.71 10.7 0.6 1 23 579 602 579 602 0.94 19 20 0.0013 0.08 13.6 2.8 2 23 616 638 616 638 0.96 20 20 2.8 1.8e+02 3.1 0.2 1 10 688 697 688 701 0.91
Sequence Information
- Coding Sequence
- ATGTCTCAAAGCGACTTCGTTTGCGACTATTGTAGTCGCTCTTTTACAAGAAAATACAACCTACAGACTCACATAGAAAACTGCCATATAACCGCTTCAAGCTATTGCGAGATTTGCGACCAGAAATTCGGGAGCCCCAGCGGCCTACAATTACATCTCTCCCGAGGTCACAACAGATATGGCCAGCCGTTCCCCGAGTGTGATATTTGCGGGCGAATCTTCACGCGAAAACAGAACATAATGTCTCATATGATTACTGTGCATTTACAAGGTTTAGGACCGGAGATCCGATGTCATACTTGTGGAAAAACCTTTACTACAGAGCGTAACATGAAGAGACACATCAAGTTATTACACAATCCTGATTTACAATATCCCACCTGCAATGATTGTCACAAGACTTTCAAGAGCAAACACTCGCTCGTCGCACACATACAGGCGGCTCACAACCACACTGATAGAACCATCAAATGCCACATGTGTGATAAAGTCTACACCAATAACAGGAACCTGAAACGGCATATCGAGATGTTACACGGTGAGAAAGAGGACCACAAATGCCACATTTGCCCTAAAGTCTACACTTCCAATCAAAGCCTGAAGCGGCATATCAGAACTACGCATACCTCTGATGAAGACAGTCTCCAATGCGAGGTAAAATTATTAGATTCGGAAAATTTCGATTGGCAAAGCAATGAATCGAATGATTCGCAGAACAGCAACACGGTCGCTTGCGAAACTTGCAACAAATCATTCGCGGAAGAGTCACTTCTACGTCAGCATGTTAAAAATGAGCATCCTTTCGATGTCTTTTACGAATACTGCAAGCGTTACTTAGAGAAAATGGCCAGCTTAGATCAGCCGACGAACAGTAAGCAAAACGTCTTCAAATGCGAATTCTGCTTCACGGCTTACTTCAACGTCTACGAACTAAAAGAACACATGAAAGTCAACCACGATACTGAATACAATTTTTGCACATGTAACGTGTGCTTCTCCAAGTTTTACAGTAAAGAGACTTTGGTTGAGCATAAGAGGATCTGCTTGCCGCCACGCGATGTCAACGCTTGCAGTTACTGTGACAAACTATTCACCGATATTTTGAGCTTAGATTTCCACATTAGGATATTCCATCCCCAAGCTCAACTCGCCGATCCAAACATAACTTCTACAAAGTCTGACGACGCTTCAGACATCAGCTCGTTCAAATGCGAGCACTGCAATAGAATTTACTATAGCGACAGATCTTTAAAGCATCACATAAAATTGAAACACACGACAGACGAGGCGGTCGAATGTGGATACTGTAACAAGATCTGCAACAACAAATACTATCTCGCGTCGCACATCAAAATCGTGCACAGCGTTGTTGATTTATCGAAATGTGACTACTGTGATAAACTATTCAAGTCCAAGCGCAATATTCGACGACACATCGAGTATACGCACATGGGGATGCAAAGATATAAGTGCATCGAATGCGAAACGCTTTTCAAAGAAAAGCGCAGTCTTCGTAAGCACGTCCGCACAAAGCATCCTAATTCTACATCGTTTCCTCAATGCCATATCTGTCACAAGAGATTCGAATCCGCAAAATCCTGCAAAATACATTTGAAACTGCTACATTCATTCAACATGAATACATATCCGTGCGATTTGTGCTCCGTGTCATTTGGATCGAAAGAGGCTTTGAAAATTCATTTGGAAACGAAACACCTGGCTGAAGATGAGATTTACAAATGCGAAGAGTGTAACTTAGTCTTTAAAGGGTCTCTAAAATTCGAGGAGCATAACGAAACTACTCACGCTTACATAAATACCGTCACAAAGCAGAAGGCTTTACCACGCTGCGTAATTTGCATGAAAGACTTCAGCACTCGGAAAACATTGAGACGACATATAAAGAAGTTTCACGAAGAATTCAACGCTGAAGACCTTGCGAACTTTGGCTGTCGAAATCGTGAATTCAACATCGATTGCGAAGACTGTTTAAAGAACGTTAACAACGAATACTACATCGACTTGTACAACAGAGTCAAGCATGTTAAAGATTCGATCGTTTTCAAATGCGAGACTTGCGACTCGTCGTTTAACGCGATAGAATTTGCGATACAGAGACACAAAGCTACAGGCGACGGGGAGAAGTCAAAAGTGATTTTGAGTGATCTGTGTACAACTCAAATGAGCGATGACGAAGAGAGCTTTGGTTCGCTACATAAATACATGGAAGCGGAGAGCACGACTGCGGATATCAAGGTGGATCCAGAAGAGAAGATTGTTGGTGTCAAAGTGGAACCAGGCGAAGTGAAAATGGAACCTATATCTTCTTGA
- Protein Sequence
- MSQSDFVCDYCSRSFTRKYNLQTHIENCHITASSYCEICDQKFGSPSGLQLHLSRGHNRYGQPFPECDICGRIFTRKQNIMSHMITVHLQGLGPEIRCHTCGKTFTTERNMKRHIKLLHNPDLQYPTCNDCHKTFKSKHSLVAHIQAAHNHTDRTIKCHMCDKVYTNNRNLKRHIEMLHGEKEDHKCHICPKVYTSNQSLKRHIRTTHTSDEDSLQCEVKLLDSENFDWQSNESNDSQNSNTVACETCNKSFAEESLLRQHVKNEHPFDVFYEYCKRYLEKMASLDQPTNSKQNVFKCEFCFTAYFNVYELKEHMKVNHDTEYNFCTCNVCFSKFYSKETLVEHKRICLPPRDVNACSYCDKLFTDILSLDFHIRIFHPQAQLADPNITSTKSDDASDISSFKCEHCNRIYYSDRSLKHHIKLKHTTDEAVECGYCNKICNNKYYLASHIKIVHSVVDLSKCDYCDKLFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTSFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKEALKIHLETKHLAEDEIYKCEECNLVFKGSLKFEEHNETTHAYINTVTKQKALPRCVICMKDFSTRKTLRRHIKKFHEEFNAEDLANFGCRNREFNIDCEDCLKNVNNEYYIDLYNRVKHVKDSIVFKCETCDSSFNAIEFAIQRHKATGDGEKSKVILSDLCTTQMSDDEESFGSLHKYMEAESTTADIKVDPEEKIVGVKVEPGEVKMEPISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209552;
- 90% Identity
- -
- 80% Identity
- -