Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.011 18 5.3 0.1 4 23 12 31 11 33 0.89

2 7 0.011 18 5.3 0.1 4 23 48 67 47 69 0.89

3 7 0.0049 7.8 6.5 0.1 4 23 84 103 83 105 0.89

4 7 0.011 18 5.3 0.1 4 23 120 139 119 141 0.89

5 7 0.011 18 5.3 0.1 4 23 156 175 155 177 0.89

6 7 0.011 18 5.3 0.1 4 23 192 211 191 213 0.89

7 7 0.0048 7.7 6.5 0.0 4 26 228 250 227 250 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.011	18	5.3	0.1	4	23	12	31	11	33	0.89
2	7	0.011	18	5.3	0.1	4	23	48	67	47	69	0.89
3	7	0.0049	7.8	6.5	0.1	4	23	84	103	83	105	0.89
4	7	0.011	18	5.3	0.1	4	23	120	139	119	141	0.89
5	7	0.011	18	5.3	0.1	4	23	156	175	155	177	0.89
6	7	0.011	18	5.3	0.1	4	23	192	211	191	213	0.89
7	7	0.0048	7.7	6.5	0.0	4	26	228	250	227	250	0.90

Coding Sequence: ATGCAGACGCACGCGGCACCTTGTCAACTTCGTCGACTCAGTGCCGCTGCGACTAGTTGTAGGAGAGGCAGCCTGACGACATCACAGAGTTGTTCCATGTGTTTCATGATGCAGACGCACGCGGCACCTTGTCAACTTCGTCGACTCAGTGCCGCTGCGACTAGTTGTAGGAGAGGCAGCCTGACGACATCACAGAGTTGTTCCATGTGTTTCATGATGCAGACGCACGCGGCACCTTGTCAACTTCGTCGACTCAGTGCCGCTGCGACTAGTTGTAGGAGCGGCAGCCTGACGACATCACAGAGTTGTTCCATGTGTTTCATGATGCAGACGCACGCGGCACCTTGTCAACTTCGTCGACTCAGTGCCGCTGCGACTAGTTGTAGGAGAGGCAGCCTGACGACATCACAGAGTTGTTCCATGTGTTTCATGATGCAGACGCACGCGGCACCTTGTCAACTTCGTCGACTCAGTGCCGCTGCGACTAGTTGTAGGAGAGGCAGCCTGACGACATCACAGAGTTGTTCCATGTGTTTCATGATGCAGACGCACGCGGCACCTTGTCAACTTCGTCGACTCAGTGCCGCTGCGACTAGTTGTAGGAGAGGCAGCCTGACGACATCACAGAGTTGTTCCATGTGTTTCATGATGCAGACGCACGCGGCACCTTGTCAACTTCGTCGACTCAGTGCCGCTGCGACTAGTTGTAGGAGAGGCAGCCTGACGACATCACAGAGTTGTTCACAGTTCAGATAA
Protein Sequence: MQTHAAPCQLRRLSAAATSCRRGSLTTSQSCSMCFMMQTHAAPCQLRRLSAAATSCRRGSLTTSQSCSMCFMMQTHAAPCQLRRLSAAATSCRSGSLTTSQSCSMCFMMQTHAAPCQLRRLSAAATSCRRGSLTTSQSCSMCFMMQTHAAPCQLRRLSAAATSCRRGSLTTSQSCSMCFMMQTHAAPCQLRRLSAAATSCRRGSLTTSQSCSMCFMMQTHAAPCQLRRLSAAATSCRRGSLTTSQSCSQFR

Sequence clustering based on sequence similarity using MMseqs2