Basic Information

Insect: Apis mellifera
Gene Symbol: slc38a11
Assembly: GCA_003254395.2
Location: NC:577076-598017[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0045 0.27 10.9 1.2 2 23 729 750 728 750 0.95

2 11 0.0066 0.4 10.4 1.5 1 23 758 781 758 781 0.95

3 11 0.00019 0.012 15.2 2.3 1 23 839 861 839 861 0.98

4 11 2.1e-06 0.00013 21.4 1.5 2 23 910 931 909 931 0.97

5 11 1.9e-05 0.0012 18.3 0.8 1 23 936 959 936 959 0.96

6 11 5.3e-06 0.00033 20.1 0.3 1 23 996 1018 996 1018 0.98

7 11 9e-07 5.5e-05 22.5 0.9 1 23 1028 1050 1028 1050 0.96

8 11 1.4e-06 8.7e-05 21.9 1.2 1 23 1056 1078 1056 1078 0.99

9 11 1.3e-05 0.00078 18.9 0.2 1 23 1084 1106 1084 1106 0.98

10 11 9.8e-05 0.0059 16.1 4.6 1 23 1112 1134 1112 1134 0.98

11 11 0.00038 0.023 14.2 0.4 1 21 1140 1160 1140 1161 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0045	0.27	10.9	1.2	2	23	729	750	728	750	0.95
2	11	0.0066	0.4	10.4	1.5	1	23	758	781	758	781	0.95
3	11	0.00019	0.012	15.2	2.3	1	23	839	861	839	861	0.98
4	11	2.1e-06	0.00013	21.4	1.5	2	23	910	931	909	931	0.97
5	11	1.9e-05	0.0012	18.3	0.8	1	23	936	959	936	959	0.96
6	11	5.3e-06	0.00033	20.1	0.3	1	23	996	1018	996	1018	0.98
7	11	9e-07	5.5e-05	22.5	0.9	1	23	1028	1050	1028	1050	0.96
8	11	1.4e-06	8.7e-05	21.9	1.2	1	23	1056	1078	1056	1078	0.99
9	11	1.3e-05	0.00078	18.9	0.2	1	23	1084	1106	1084	1106	0.98
10	11	9.8e-05	0.0059	16.1	4.6	1	23	1112	1134	1112	1134	0.98
11	11	0.00038	0.023	14.2	0.4	1	21	1140	1160	1140	1161	0.94

Sequence Information

Coding Sequence: ATGACTTTAAACGCGAATGAAAAGAGTTATATCTTGGATGCGAGGAATAATTACGAAGATgGAGGCAGTCTTGGTTCAGAGGAATCTTATGATGATATGAGACAACTTGTTGGGgaaaagaaggaagaatccGGAAAATTTACTAGTCTACCTTTGGCCagttttaatttcatcaattccATTATTGGCAGTGGTGTTATTGgtaTACCTTATGCTCTTCATCAAGCTGGATTCGgatttggaataatattattaatactgaTAGCAGGTCTAACTGactattctttaattttaatggttAGAAGTGGTAATATATGTGGTGAAATGAGCTATCAGGGTTTAATGAGAGCCAGTTTCGGTCGTATgggattttatattcttacaagcttacaatttatttatccttttatAGcaATGGTCTCCTATAATGTTGTCGTTGGTGACACGGTAACAAAAGTGTTAATAAGAATAACAGGCATAAGCGAAACGAGCATTTTTGCTCATCGTCAAGTGGTTGTTTTCTTTGCTACTGCTTGCATTACTATACCATTGTGTCTTTATAGAAATGTAGCTCGTTTGGccaagatttcttttctttcattagtCTGCGTTGGTTTTATTCTTTTGGCGATTTTAATTCGGATGGATACGATGTCAACAATTGTgcCAAATCAAGAAGATAGTTGGCGAATTGCAAATTTCCGTGGCATAGTTCCATCCGTTGGAATTATGGCATTTGCCTTTATGTGTCATCATAATACATTCCTTATCTATGAATCTATAGAAAGGGCTACTCAACAAAAATGGGATATTGTCACTCATTGGTCATTATTTACATCCTTTTTGATCGCTGCAGCTTTTGGAATCATTGGATATACCACGTTTACCTCATATGTTCAAGGTGAtcttatggaaaattattgttgGGATGATGATCTGATGAACTTCGCTAGACTTATGTTTAGCGGTACTATTCTTCTAACGTTTCCTATTGAATGTTTCGTCACAAGAGaagtAATATTGACAGCTATCAAAGGAACTGATGAACTTGAAAATCATACAACTTATATACCTAATTCTGATcggaaatatttgataattactcTGACAATAGTAGTGGTcgcttatttaatttctatgtcCACTGATTGTCTTGGAGTGGTTCTCGAATTAAACGGCATTCTTGCTGCTGTACCATTAGCCTATGTTCTTCCTGGTCTTTGTTACCTGAAACTCGAAGAAGGATCAGTGTTCTCATCAAAGAAACTTCCAGCTTTGGGATTGATGACTGCTGGTATGTTCGCTGCAACCTCTGGCTTATTATTGTTGATCCTGAACAGAGATACTTCTGGTTCCTGTGTACATGGAAAGGTGGGGAGTTTGAGTCATAGTTTGATTTCCAAATGCATTAGAATGGAAGTTTCGAAAAACGAACAGATAGTTGATACATATGagaaaatttatggaaatgaATGTCGAATCTGTTTGAAAAAAGCTGTTGAAATTTGTGAACTTTTTAGAAATGGGGACACTATTCCTCGTAAACTTATGGCTGTTGCCTCAGTACAGGTTAAAGAAGGAGATGGTTTACCACAAATAATCTGTTTGTCTTGTAATCAACGTTTGGATgcatcttataattttaaatgtcaaATACAAAATTCAGATACGAAACTTCGTCAAATCTTAAAACTAAAATCCTCTTCTAATGATTCTGTTACCAGCACTAGTATAGTTACAGCAATAATTGCTGATGTAATATCTAGTGTAATATCATCTGAGAAAGAAAATGTAGAAAAGCAAGAAGTTTgtcctacaaatttttgtcctgaaaatttttgttttataaaagatgaaaattccTTTTGTCTTAATACacaggaaaatttattttgtcatgataaagaattagaaaatcaatcacaaaattttcaaaatgacaCAGAGCaacgaaaaaatttagaaaatgtaaatgtttataaaaatttattagatgatAATTCTGTAAGACAAATCAATTCAATGAAACAAGAATTTTCTCTATTAGATGGTCATGTACAAAATAAAGatgttttaaaagaagaagtaaATATTGAGGAAAACCAACAAATGTTAGAAATATCAAGGATGGATAATATTCAAGATGATGAAGAAAAACCATTAATTTCACGTACAACTAGATTACGTTGTACTCAATGTATTAAGTCATTTCATACAAAAGTGGCTTTACAGAGACATGCTATTGTACATAAACACAAAACTAAATTACGTTATGTTTGTTATGTTTGTGATAAACAATATTCTACTCttacaaaagtaaaaaatcaTGTTGCAATTTGTCACGAAGTTCATGataggaaagaaaatattcaacataAGAGAATTAAATATGAGCAAAGCAAAACAATTACAAGTGTACAAGATAAAAGAATTAGTAATGtccaagataaaaaaataaaagtggaaaaaaatgataatttttcaaagaaaaatgagCAAAGAAAAAGCCTAAAATTCACATGTGAAGTTTGTTCAAAACAATTTACTTATCAAAAATCCTTTATTACACATGCTAAAAGTCATccagaatataaattagaagaatcaGATGATTCATCTCAATATTCATCCAAAGGAAGATCTACAGAAActgtaaaagaagaagaagagaatgaagaagaagatgaagaagatgaGGAAGATGAAAATCTTCCTGTTGAAAGTTTACAATGCACTCAGTGTGGAAAATTGTTTGCAACAAAAAGGAATCTTAAAAGGCATGTTTCTACACATAGtggattaaaatatacttgtGAAACATGTGGTAAAGGATTTTCAAGagtagataaattaaaagatcatGAGCAATCAAAACATAAatctgaattatttgaaaattctgattttgatGATAAAGAAGATATGGACAATGTAAATAAAGGAGATTgtttagaagaaagaaaaaagGATCGTCATAATAGACCTCACAAATGTGCAATCTGTCCTAAATCTTTTGCACAGGCTCAATCACTAGCAAATCATATAGAACGTCATAAACGTGTCAAAGAAACgcaaaaaagatttctttgtGAAGTTTGTAGTAAGTGCTTTGCACAAAGTGGTTCTTTGGTAGCTCATATGCGTACTCATACAGGAGTCAAACCATATGTTTGTAACATATGCAGTAGAGCTTTTACAAAAAGcacatatttacaattacattTGCGTACTCATAGTGGAGAAAAACCTTATATATGTCAATATTGTAGTCGGGCTTTTGCACGTGCTAATACATTAGCACGGCACATAACAATGCACACAGGAGAAGCAAAATATCATTGTCAAATTTGTACAAAATCATTTAGAAGATTGACCTCATTAAATGAACATACTTATACACATACTGGACAGAGACCATATGCatgtaaaatttgtacaaagaGATATAATAATGCTGGATCACTTTATGCACACAGAAAAAAATGCAAAGCACAGCAATTATCTACTCCAGGATTTGCAGTTTCTGAAGAAAATTCTGTATCACAACCAGATTTAGATGTTCCTCAAGTTTTGATTTATTCTCACAGGAAATTAGTAGAAGATGCAACTGTTGGACAAGTTACACCTACACCACAATATATGATAGCAAACGTACACAATCAGAAGAATACAACATCAAATATGATTCAATCTTTTTCAGTAGATGATCCAAATGTTTATGCAATTAATTCGaagcaatttaaaaatccttattatacaatttatccaaatatgtaa
Protein Sequence: MTLNANEKSYILDARNNYEDGGSLGSEESYDDMRQLVGEKKEESGKFTSLPLASFNFINSIIGSGVIGIPYALHQAGFGFGIILLILIAGLTDYSLILMVRSGNICGEMSYQGLMRASFGRMGFYILTSLQFIYPFIAMVSYNVVVGDTVTKVLIRITGISETSIFAHRQVVVFFATACITIPLCLYRNVARLAKISFLSLVCVGFILLAILIRMDTMSTIVPNQEDSWRIANFRGIVPSVGIMAFAFMCHHNTFLIYESIERATQQKWDIVTHWSLFTSFLIAAAFGIIGYTTFTSYVQGDLMENYCWDDDLMNFARLMFSGTILLTFPIECFVTREVILTAIKGTDELENHTTYIPNSDRKYLIITLTIVVVAYLISMSTDCLGVVLELNGILAAVPLAYVLPGLCYLKLEEGSVFSSKKLPALGLMTAGMFAATSGLLLLILNRDTSGSCVHGKVGSLSHSLISKCIRMEVSKNEQIVDTYEKIYGNECRICLKKAVEICELFRNGDTIPRKLMAVASVQVKEGDGLPQIICLSCNQRLDASYNFKCQIQNSDTKLRQILKLKSSSNDSVTSTSIVTAIIADVISSVISSEKENVEKQEVCPTNFCPENFCFIKDENSFCLNTQENLFCHDKELENQSQNFQNDTEQRKNLENVNVYKNLLDDNSVRQINSMKQEFSLLDGHVQNKDVLKEEVNIEENQQMLEISRMDNIQDDEEKPLISRTTRLRCTQCIKSFHTKVALQRHAIVHKHKTKLRYVCYVCDKQYSTLTKVKNHVAICHEVHDRKENIQHKRIKYEQSKTITSVQDKRISNVQDKKIKVEKNDNFSKKNEQRKSLKFTCEVCSKQFTYQKSFITHAKSHPEYKLEESDDSSQYSSKGRSTETVKEEEENEEEDEEDEEDENLPVESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKSELFENSDFDDKEDMDNVNKGDCLEERKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNICSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSTPGFAVSEENSVSQPDLDVPQVLIYSHRKLVEDATVGQVTPTPQYMIANVHNQKNTTSNMIQSFSVDDPNVYAINSKQFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141354;
90% Identity: iTF_00140748;
80% Identity: -