Basic Information

Insect: Apis mellifera
Gene Symbol: -
Assembly: GCA_003254395.2
Location: NC:9098326-9101919[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.011 0.68 9.6 0.2 3 21 8 27 6 28 0.85

2 14 1.1 70 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.6 37 4.2 0.4 1 12 237 248 237 257 0.89

4 14 0.0087 0.53 10.0 3.1 1 23 367 389 367 389 0.97

5 14 0.00015 0.0089 15.6 0.2 2 23 393 414 393 414 0.97

6 14 0.00073 0.044 13.4 4.9 1 23 425 447 425 447 0.97

7 14 0.023 1.4 8.7 0.1 1 23 466 487 466 487 0.76

8 14 0.00043 0.026 14.1 0.1 2 23 493 514 492 514 0.95

9 14 3.1e-05 0.0019 17.7 4.8 1 23 543 565 543 565 0.99

10 14 1.3e-06 8.1e-05 22.0 3.7 1 23 571 593 571 593 0.96

11 14 0.00071 0.043 13.4 3.9 3 23 601 621 599 621 0.97

12 14 9.3e-07 5.7e-05 22.5 0.8 1 23 627 649 627 649 0.98

13 14 5.9e-05 0.0036 16.8 0.2 1 23 653 675 653 675 0.99

14 14 0.00025 0.015 14.8 0.2 1 23 683 705 683 705 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.011	0.68	9.6	0.2	3	21	8	27	6	28	0.85
2	14	1.1	70	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.6	37	4.2	0.4	1	12	237	248	237	257	0.89
4	14	0.0087	0.53	10.0	3.1	1	23	367	389	367	389	0.97
5	14	0.00015	0.0089	15.6	0.2	2	23	393	414	393	414	0.97
6	14	0.00073	0.044	13.4	4.9	1	23	425	447	425	447	0.97
7	14	0.023	1.4	8.7	0.1	1	23	466	487	466	487	0.76
8	14	0.00043	0.026	14.1	0.1	2	23	493	514	492	514	0.95
9	14	3.1e-05	0.0019	17.7	4.8	1	23	543	565	543	565	0.99
10	14	1.3e-06	8.1e-05	22.0	3.7	1	23	571	593	571	593	0.96
11	14	0.00071	0.043	13.4	3.9	3	23	601	621	599	621	0.97
12	14	9.3e-07	5.7e-05	22.5	0.8	1	23	627	649	627	649	0.98
13	14	5.9e-05	0.0036	16.8	0.2	1	23	653	675	653	675	0.99
14	14	0.00025	0.015	14.8	0.2	1	23	683	705	683	705	0.97

Sequence Information

Coding Sequence: ATGGGCTCGTTAAATCTTGTCTGCCCAATGTGCTGTGGTGAAACATTTAACAATCCACAGTCATTAAAGTACCATTTATTAAGCATGACGGACAACCTATACTGTCCTGGTTGTTCGCAGCGGTCTGACTCAGTAATGGCACTCATTCAACATTTGGATCGGTGTGGACAAAGCGTTGAATCAGAGGCATCATCTGAATCAAAACATGATCCTGAGGAGGATGTTCAACAGGAATCTCAACCAGTAGATACAGAAGTGTTAATGgATACAAATGTTGAAGGGATAGATCAAAGCTTTCTAGCAACTGTAAATGACACTGGAATTATGATAGTTGGTGGGCCTCAAACTATACAAGTTGATGAAAATGGAGATATTAAAGTCGTAGAAAAGATGGAAACTGAAGAGACACACATGGAGCAAAATTCTTTGGAATTTAAGATGTCAGAAAAAGTTCCTAATATTGCAAGCAAAgcagaagaaaaatctttatctcAGGATCAGTTAGTGGCAATTTCAACCACCTCAGAGAcagatgataaaaatagaaataaaaatgtaattactaTTTTACCTGATGGTTCAGAACTTCTTGATGGAGATACTGGTGCTTTGATAAATATGGATCATATAAATGATGTAGGTGAATTAGATGAAGATGGACTTTTACATGTTAAACAAGAACTTTGTGAgattgaaCCAGAAGCAGTTTACAGTTGCACTAGTTGTGACATGAGCTTTAATTCTGTTGTGGaacatataaaacaatttcatgATGGACAAGAAGTACTACTTGAAATAGCTGATCAATTAGATGATATTCCTACAGTACCTGCAACTAACACCTTAACTTCAGAATCAGGAAATGTAATCAATAATAGACAAAGACAAAGTATGAATACTCTTCGTACAGAAGAATGTGTAGACAGTGAAGGAAGATTATATACAAGAAAAGTAGTACAAATAGAAAGATTCTGGGATAGAACTCCAGCACAAACATCACTTCAATCTACTAAAGCAccaatgattgaaaaatttttttctaatgtaGAAGGAGTGAAAGTACGAGAAAAAAGATTGGCTGCAACACCAATGAGAATGTATAGATGTAATCAGTGCCTTCAGCAGTTCTCTAAATTAGGAAACTTTCGAGTTCATGCATGTCTTCATGGCAATAATCGTTGCGATAGTTGTGACCAAACTTTTGCAACACCAAAAGCATTACAATTACATGCAAAAGTACATGAAGGTGAACCTGATCCGAATCAAAAAACTTTCATATGTGAAACTTGTGGTACAGAATTTTGTTCACATAAAAGTTTGCGCTTGCATTCTCGAATGCACGCACCAGTCAGAGCAAGGCATGTTGATGCACCTGAAGGAACACCTAGTGCAACATTCACGTGTCCTGAGTGCGgcAAAACATTAGCAGAATCATACAAGGAAGCGCACATGGCATTACATTCTGGTGATTCTGTTACTTGTACAGTATGCAATAGGAAATTTGATTCTGCTGATAGTTTAGCAATGCATGCCGCAGTACATACAGAACTAAGTCAACCACATTCACCAACACCACCTACTACAGAGACTGCTACAACTGCTGAACCTGCAGAAAATCAAAAGCCTTATCAGTGTCAACATTGTGGTCGCAGATTTACAAGACCTCATGAGAAAGTAAAACATGAACGCATCCATACTGGGGAAAAACCACATGCATGTGAgGTTTGCGGTAAAACTTTTCGCGTATCTTATTGTCTGACTTTACATATGAGGACTCACACTGGAGTCAGGCCATATGGATGCCAACATTGTGGTAAAAGATTTAAGGCTTCATCCGTATATAATCATCATTTGCTTACACACGGAGAAGAACGTGCTTACACATGCCCATATTGcccaaaaacttttaaaacacGTGTTCAATTAGCAGGGCACAAAAATAGTCACACTAAACCATTTCGATGCACTGAATGTTCCCGTCCTTTTGCTTCTTTATACGCCGCGCGTGCTCATATACAAActcataaaaaagataataatttaaagttcaGTTGTTATATTTGTGGTGCATCCTATGGTAGAGCATTTGCTTTGAAAGATCATTTAAAACAACATGGTCAAGATGTATTAGCTCCACCAGAACCagcaagagaagaagaaattcatgAAGGAGAAGATTTTTTGCTTGCTGAAGAAGAAGTTGAAGATGATGAACTAGTTATTCCGTCACCATTACCCGTCGCGCAATCATCAGAAGCTGATGATACAGAATGA
Protein Sequence: MGSLNLVCPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQSVESEASSESKHDPEEDVQQESQPVDTEVLMDTNVEGIDQSFLATVNDTGIMIVGGPQTIQVDENGDIKVVEKMETEETHMEQNSLEFKMSEKVPNIASKAEEKSLSQDQLVAISTTSETDDKNRNKNVITILPDGSELLDGDTGALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPTVPATNTLTSESGNVINNRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPAQTSLQSTKAPMIEKFFSNVEGVKVREKRLAATPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELSQPHSPTPPTTETATTAEPAENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEIHEGEDFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -