Amei003626.1
Basic Information
- Insect
- Apis mellifera
- Gene Symbol
- -
- Assembly
- GCA_003254395.2
- Location
- NC:3862027-3865099[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00039 0.024 14.2 0.1 2 23 27 48 26 48 0.97 2 11 0.0019 0.11 12.1 3.5 1 23 92 115 92 115 0.98 3 11 9.1e-07 5.6e-05 22.5 0.5 3 23 123 143 122 143 0.98 4 11 0.0008 0.049 13.2 5.9 2 23 150 171 149 171 0.95 5 11 9.8e-08 5.9e-06 25.6 0.4 1 23 177 199 177 199 0.98 6 11 0.00057 0.035 13.7 2.1 1 23 246 268 246 268 0.97 7 11 3.5e-07 2.1e-05 23.8 1.9 1 23 683 705 683 705 0.98 8 11 0.00078 0.048 13.3 1.8 1 23 712 735 712 735 0.94 9 11 6e-05 0.0036 16.8 0.3 1 23 743 766 743 766 0.96 10 11 7.3e-06 0.00044 19.7 2.5 1 23 772 794 772 794 0.97 11 11 0.0016 0.098 12.3 5.7 1 23 800 822 800 822 0.98
Sequence Information
- Coding Sequence
- gagTATAAAAGCatgtcatttattttaaattcagaagaaaattgtaaaaatgatattcaaataCAATCCATTAATCTTGTATGTCCAGTATGTAATGTTggatatataaacaaaaaagaattctacAATCATTTACGTATCCATACTGGAGATGTACTATTAAAAcatatgcaatattttaaaaaagatacaaacaATAGATTAGAAACAGTGCcaaaatattcgttattaaaaaaaagagataataatttttatgaaactatATTAAGACCTTTTAAATGCCAACAATGCAGTTTAACTTTTGACAGAGCTTCTCAATATGATTATCATCATCGAAGTATACATTTAGGAGAAAAATCTCAGCTTTGTGAAATCTGTGGCAAAAGCTTTTTTCGTAAAGCAGATTTAAGAAcccatttaaatattcacttaggtacaaatatttgcatttgtGAAGTTtgtggaagaaaatttaatcacatatctaatttaattagacATTGCAGAATGCATGCTGgaataaaattatatccatgTTCCATTTGTGGTAAACGTTTTACTCAGATTAGTTCCCTTGCAAGACACAAACGTATTCATGAAAGGGTAAAAGATGatgttaaatttcatttacaaaataatttcaacaatagtaatttacagaaaaaagatgcaatatataagaataagTTTGTTGAAGGTAATGCACCTAGTCAGCAAAAGGTTGTCAAGAGACaacattattgtaaaatttgtggtgaaagtttcaattttatctttctcttaaGAGAGCATGAGAAATCCCATTCAGAAACTTTGGAATGTAAGAATAATAAGATgaGTTTTCAGAAAactatagaatttaaaaaacaaaccgagtataatgataattttgatttctttgaaaatgaaataaatataaaaaaagttttaccattagaaacaattatttatatcacatCAGAAcagttgaagaaaattaatttagaaaatgttgAAGACAATAGAAATCACATTTcacaagaaaatttatgtgAAACAAAGATTTTAGCAGATGAGGAATTAAATATCTCTCAGAAAGTAACATTTAAGAATGAACAAACTCAATTTGTTCAAGATACTCCACATTTGTCATGTAAATCTAATtgcatagaaaaagaaaatgtaacatATGTTTGTCAAGTAGacgaaaatattctaaaaagtaaattatgtaTACAAACATGCGAATTAGACTTACAAAAATCCGAAAcgaattataatactttaataaataattctgtaaATGTTACTGATATGTTTCAAAAGATAGACCTCTCAGAATCTAATAGCAATGAACATATTAATTctgattcaaatataaataaaaatcgggaaataaatttaatacaaagtggaaaaatatctgatgatttaaatgatataaataatattgtaaatcatGATGAATCAATGTTGCGATTAGTACAGACAGAAACAGGAGaacaattttacgaatttttaattaacaatttagtTGAAAAATTACCGAATACACAATCTGCAAAAAATCATGAGAATAAAgatgatacaaatataaatgaagGAAATCATCAAGAGCAAAATATACGAGATGATTTACATAATGACTTAAATTATGTGCAATATGAATtacaagaggaagaaaaaaattttgttacaaatcaaattttattagacaCACAAtctgattttgataaatatgttgaaacaaatttcgaagtatttgaaagattaaattacgATGACAGTTCCGAACGGTTTCTTGAATTTGTTGAAACAGGACTTGAGAATCAAAGCTCAAAAATTTCAGAATGTAATAAAGAAAGTGAAGAATTCTTacagtttcaaaattttaatcaagttAATGCTCTACAatcaaatgaagaaaatattattagtaataataacagtaataatgcaattattaaaaccaatggaaaacaagaaaaaaatgaaaatgacatTAGTATTAATGAAAAACCAAAGAATGAACAAGAttcaaaaaaaacaaaaacttttttaataaaatttcaatgtacagtatgtgaaaaatctttttcaactagttacaattataaacaaCATATAGGTACTCATTTTGCAGATCagcaaaaatttcattgtaaaGATTGCAAAATATCTTTTGCTTGGAAATCaacattaaataaacatatcgCAAATAATCATAGACCAGATGGTCCACAGAAATTTGCATgtgatatatgtaataaaatttataacacttCTTCGCAAGTAAATGAACATGTAAAACGTGATCATTTAAAACAACGAAATCATGTTTGTTCTCAATGcggtaaatcattttttaaaaaatacgatttaaaaatacatggtAGAATTCATACTGATGAACGACCTTATGTCTGTCGCGCTTGTGGAAAAAGATTTCATCATCGAAGTCATATTATTCGACACGAACGGATACATTTTTAG
- Protein Sequence
- EYKSMSFILNSEENCKNDIQIQSINLVCPVCNVGYINKKEFYNHLRIHTGDVLLKHMQYFKKDTNNRLETVPKYSLLKKRDNNFYETILRPFKCQQCSLTFDRASQYDYHHRSIHLGEKSQLCEICGKSFFRKADLRTHLNIHLGTNICICEVCGRKFNHISNLIRHCRMHAGIKLYPCSICGKRFTQISSLARHKRIHERVKDDVKFHLQNNFNNSNLQKKDAIYKNKFVEGNAPSQQKVVKRQHYCKICGESFNFIFLLREHEKSHSETLECKNNKMSFQKTIEFKKQTEYNDNFDFFENEINIKKVLPLETIIYITSEQLKKINLENVEDNRNHISQENLCETKILADEELNISQKVTFKNEQTQFVQDTPHLSCKSNCIEKENVTYVCQVDENILKSKLCIQTCELDLQKSETNYNTLINNSVNVTDMFQKIDLSESNSNEHINSDSNINKNREINLIQSGKISDDLNDINNIVNHDESMLRLVQTETGEQFYEFLINNLVEKLPNTQSAKNHENKDDTNINEGNHQEQNIRDDLHNDLNYVQYELQEEEKNFVTNQILLDTQSDFDKYVETNFEVFERLNYDDSSERFLEFVETGLENQSSKISECNKESEEFLQFQNFNQVNALQSNEENIISNNNSNNAIIKTNGKQEKNENDISINEKPKNEQDSKKTKTFLIKFQCTVCEKSFSTSYNYKQHIGTHFADQQKFHCKDCKISFAWKSTLNKHIANNHRPDGPQKFACDICNKIYNTSSQVNEHVKRDHLKQRNHVCSQCGKSFFKKYDLKIHGRIHTDERPYVCRACGKRFHHRSHIIRHERIHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00140744;
- 90% Identity
- iTF_00140744;
- 80% Identity
- -