Basic Information

Insect: Apis laboriosa
Gene Symbol: RREB1
Assembly: GCA_014066325.1
Location: JACEOM010000931.1:1096439-1108620[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00096 0.18 13.3 0.2 1 23 59 81 59 81 0.96

2 15 1.2e-05 0.0023 19.3 0.7 1 23 95 118 95 118 0.97

3 15 0.01 2 10.1 0.2 1 23 212 236 212 236 0.95

4 15 0.057 11 7.7 3.0 2 23 242 264 242 264 0.95

5 15 1.5 2.8e+02 3.3 0.6 1 19 320 338 320 340 0.89

6 15 0.16 30 6.3 0.1 1 23 454 476 454 476 0.96

7 15 1.3e-05 0.0025 19.2 0.3 1 23 485 507 485 507 0.98

8 15 0.00098 0.19 13.3 2.8 1 23 513 536 513 536 0.97

9 15 0.00036 0.069 14.6 3.0 1 23 912 935 912 935 0.97

10 15 0.00052 0.099 14.1 0.1 3 23 1203 1223 1201 1223 0.97

11 15 0.46 88 4.9 6.0 1 23 1229 1252 1229 1252 0.97

12 15 0.0033 0.62 11.6 2.2 1 23 1290 1314 1290 1314 0.97

13 15 2.3 4.3e+02 2.7 4.8 1 23 1398 1421 1398 1421 0.94

14 15 0.016 3.1 9.4 0.3 2 23 1472 1493 1471 1493 0.92

15 15 1 2e+02 3.7 8.2 1 23 1499 1521 1499 1521 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00096	0.18	13.3	0.2	1	23	59	81	59	81	0.96
2	15	1.2e-05	0.0023	19.3	0.7	1	23	95	118	95	118	0.97
3	15	0.01	2	10.1	0.2	1	23	212	236	212	236	0.95
4	15	0.057	11	7.7	3.0	2	23	242	264	242	264	0.95
5	15	1.5	2.8e+02	3.3	0.6	1	19	320	338	320	340	0.89
6	15	0.16	30	6.3	0.1	1	23	454	476	454	476	0.96
7	15	1.3e-05	0.0025	19.2	0.3	1	23	485	507	485	507	0.98
8	15	0.00098	0.19	13.3	2.8	1	23	513	536	513	536	0.97
9	15	0.00036	0.069	14.6	3.0	1	23	912	935	912	935	0.97
10	15	0.00052	0.099	14.1	0.1	3	23	1203	1223	1201	1223	0.97
11	15	0.46	88	4.9	6.0	1	23	1229	1252	1229	1252	0.97
12	15	0.0033	0.62	11.6	2.2	1	23	1290	1314	1290	1314	0.97
13	15	2.3	4.3e+02	2.7	4.8	1	23	1398	1421	1398	1421	0.94
14	15	0.016	3.1	9.4	0.3	2	23	1472	1493	1471	1493	0.92
15	15	1	2e+02	3.7	8.2	1	23	1499	1521	1499	1521	0.98

Sequence Information

Coding Sequence: atgtataggcAGCGAAATGTAAAGGAAAAAGGGGAGATGCAGAAacgagggaaggaggaggcaTGGAGTGGTGGGGGAAtgaCCGTTAAGAGTGGCTCAGATCAGGGACAGGAAAACGAAGCACAAGCTGATGCTGCATCCTCACCATCGAGTATTGATTTGCCAGAAAGCGCGCATCCCTGCCCTGCCTGTCCAACAGTGTTATCTACCTCCAGAGAGTTAACAAATCATTTACGTGGTCATAGTTCACCCCGCAGCACAGATTGCAGCGGTGAAGATGATTACTGTTGCGGTATTTGCAACAAAGTTCTCAGCTCTGCGAGTTCCCTAGACAGGCACTTAAGAACGGCGCACAGGACTACATCGCCACACAGTTGCACAGATTCGGAAGGTAGCAGCGATTCCGACAAGTCGTCCAAGAGGCGCCATCTCGaggaatataataacaatgaaatCACAAAGAGAAATTCACCAGATTTTATCGAGGGCCAGGAGGAAAGGAGTCCAACGTTACCTGGGAAGAGAAAATGTTCGGATTATTTGAGCGATAACGAGGGACAGAAAAGGCATAAGATTCTCTTAAACAATTCGAGAACCGAGATAAAATCGATACCGGATGATAATCAGAACGCATACAATTGTCCAGTGTGCGGGAGGCAAGATTTTGCTACTAGTGCCCTCTTAGAGGCGCATTTGGAAAGATGCCATCCCGAGTTCCCCGCTAAATGCGACACTtgcaatttatcatttaaaaaccaTCGTGTTTTGAATCTGCACCGTTTCATGATCCATTTTGCAGAACATTCGATAGGGAATACTGCAAGAAATTTGAGAAACTCGGTGGTTGGTTTCAACGATTTAACATTCGTTGATTTCTCGTCGGATAAATTCCCAGCTATAGCCAGAGCCGTATGCGAACAATCATTGCATCGGCCGGCATCCGGGGAAGTGACCAAGTTCCAATGCTCCAAATGTTTACGAGCATTTCCCTGTAGATCGGCATTAGATGCTCATGAAACTGATTGTGGAACGACAAATTCCCAAATAAGAACGACCGACGATAGTCAGTCGAGGAGGGACGATTTCTTTGCCGGTTTAGACCTTCAAAATAAGGCTGCTTTAACGGAAGCCAAAGAGGGGAAAGATTTAGCCGATATCCAGAGTATCATATCAGTTACTTCTGGGccgattttgcaaaatttcccTCGATCAGACGCTAGCACGCcagaaagtaatattaaattcaatcctAGCGTGAGTTCCTCCGGCTCTTCAGGCACTTATTCCTCGGAATATCACGAGGAAGAAGCTCAAGATGCGTTTGCCGCAGagtttagaaaaatgaaactgaAAGGAGAATTTCCTTGCAGACTTTGTTCTGCGATATTTCCTAATTTAAGAGCTTTGAAGGGTCACAATAGGGCGCACATGGGAGTAGGACCTGGTATGCCTTATCCCTGCAATATGTGTCCCTATACCAGTACTGATAAAGCGACTTTAATACGACATTTGAGGTCTCACAACGGTGACAGACCGTATGAATGCTCGTTATGCAATTATGCTTTTACGACGAAAGCGAACTGCGAACGTCATGTGCGAAATCGTCATGGAAAATTGACCAGGGAAGATATTAAGAgcgttttaatttatcatcctAATGAGGATTCTACTAATGAAAACGTGGAGAGAAGTTCACCAAGGGTTTTAAAAGAGGAGGtaagaaaaagtttaatatattctacagAACGTGAAGAATTTCATCATCAGGCACAAATACATTATCCTCCAGTACCAATAGATGTTCGAacagaaattagaattatagaagAAGCAAAATTGCATAATTCGACAATGTCTGTACACAACACgaatcatttcgaaaaaaatgaaatattttccaggCCAAATCAAGCTATAGAGTTAAGTCAACGTAATATCGATGAAGGGAAATCCAGCCAGGATATTAAGCCAGATTATTCGAAACTTGATGATGAATTGGATTCGAGGTCATCAGACGATCTCGCGTCTCTAGTCAATGATGTCAAATCTGATTCACACCAAAGAGTACAAGCTAGtccaataaatttgaaaaagggTTTAAACATGGCTGAAAATTCTGGCGAGGACGGGCCATTGGATCTTTCAATGGATGTGTTAGATCTTAGCAAAAAatcgaaggagaaagagaataacGATTTTATATCTCGTGACAAATTTAACAAAACCGAAAAAGATTTATACGCCACCAGTCAGTTACTATTGACTGAGGCGTTGCTAAAAGCCGGTCAAGGTAGCACGCAATCCGCCTCACTTGAAGCTTTATACGCCAACgccatttatagaaatttcagTACGTTTCCAACAGGTACTGGAATTTTGCCACCGTATATGTTTAATCCTCATGTTTTTAATCAAGATTATTGCATGAAAGAGAGATTGCAAAAAGAACTAGTACGAGGACTTCAATTAACCAGTGGTGGCAGTTTAGTAGAACCATCTATGCCTAGTGCCACAggatttaataacttttctcAAAATAGAGATATGAATTCTCAATCGATAACCGAACAAAGCGAATATGCcaaattaatatcttctaaGATGGTTAATAAAAGTTTGACGCATCGCGACAAACAGGATAATTTAGCTTCTTCGAATTCTGTAAAAATGGTGATTAAAAATGGAGTGTTAATGCCTAAGCAAAAGCAAAGACGATATAGAACTGAAAGACCATTTACCTGTGAGCATTGCTCGGCGAGATTTACTTTAAGAAGTAATATGGAAAGACATATTAAGCAGCAACATCCTCAGCATTGGAGCCAGAGACCTAGAGGAGGGCACTCGACCAGAGGTAGACCTCCTAGCCATCCTACTTTGCTGCAAAATCTTGGACAGACTTCTCAGGTTACCcaatcgtttaatattttgccAAAAATCAATGAACAATCAATGAGTTCAGAATTCGCAAAGCATTCTATTTCAGATCAAgtaaaatatgcaattttgGCGCAGCAGTTAAAAACGAACAAAGTAGAGGAAAATGATTCTGAGGAAGAGTTAATTATAGATGAAGATCCTCAAGATAAAGAGGATGATAAATCTCaagatcaaaaagaaaaaagtttattaagaGATCAATTAGAAATTACAGATTCTATCtcaatgaaagaagaagataaaaaatctatgCATGACTCAAAAGAAACAAACGAGATTGAAAAAAACGAGAAgatgattaatgaaaaaaaaaaagaatctaagaTGGAGAAATCTGAAACAAAAACATCAATTGACAAATGTCCTAATacagtattaaaaattgaaataaaaagtgaaaaaatagaagatggAGTAACTGACTTGGCTAGCGTGTCAGAATTATTGGATAACGCTTCTCAACAATATCAACAATTTCAGCCGCAATACTTAAGCGATGAGGAAGGTTTAGCCGCGTCTAATAGCGATTGCAATAATTCCGGTAGCGATGAAAAATCTGAttctataaattcttcaaattcgataaataatccatccaagaaaaaaaagaaaaagaagaagaagaagaagaaaaaatctgCGTATTCTATGGCCCCCAATCGAGTAATTTGTCCATATTGTGAAAGACCATTTCCTTGGACTTCTTCTCTCAGAAGGCATATATTAACCCATACGGGTCAAAAACCATACCAATGTGTTCACTGTTCCTTGCTTTTCACTACTAAATCAAATTGTGATCGCCATCTATTAAGAAAGCATAAAGCTAATCCCAATAAAATACGTCGGAtcagaaattcttcttctcccgATTCCCAAACAatgattaacaataataattcattctcAATGAGAAATGTTCCAGAAAGACCATATAAGTGCAATCAATGCCCTAGTTCAACTTTTTCTACTTTAGGAAATTTAAAGAAGCATCGTTCCACTAAACATGCACGAAAAATAAAACCAAGATCAGATACTCCATCCAGTGAACCTCAAAATAGTCCTCAGGAATgtcgaaaacaaaataatgaacAAACTGATTATGATAGTCAATCTTCGAGTATATCTGAAGGCACAGAGACTTCATCAATACCAAGAATTCCTAAATCCACATCGAATATTTCACCATCGGCTAATGATGTTCCCAGATCGAGAAAAGCGTCGCCAAGATCATCACCGGGACCAGGTGATGTACCGTTTAAATGTCATTTATGTGACTGTGGTTTTGCAGAACGACAGGATTGCTTAGaacacattaaaattaatcataagcGATCCTATGAAATGCTAATGGCCAAAGGAGCATTAGATATGGAAATAGGTGATACAGTGGAAGATCACCAACAATTACCATTACATCAAACTAGCGATggtgaagagaaaaaaggacgTTTTCCAGATTATAGTAATAGGAAGGTAGTTTGTGCCTTTTGCATAAGACGATTCTGGTCTGCAGAAGATCTTCGTCGTCATATGAGAACTCATACTGGAGAACGGCCTTTTTCCTGCGATATTTGTTGTAGAAGATTTACCTTGAAACATAGCATGCTGCGACATAGGAAGAAACATGAATCTATCGATTCGACAATGTATATTGGTACAAGTGGCGATGAAGAGAATTCTCCAACACAGCCACCAACAATTACACCACGAAGTCAGCAACAACAGCCAATTCTATTGGCAACCAATAACGGAAATTCCCTAATTCAAGATAGAATCTCTTTACCTACTGTTGCTTCAGTCGCTACTGGTGATGCTGCACCAAGTGGACTGATGAGATTTAATCCCTACGAGAAATTAACTACTCTCACGGGAAAGTTGGCTAGTATTCCGCAAAATGTGAATCCAGAAGCAAACGAGAATAtggataatgatttaatttcgaatcttttaggaataagagataaaaatttcatggaTCGAGTACTGCAAGGAACTGCTGACGATGCCGCTAAATTATTAGGAcaaaaacGGCTGCGTACAAATCGACGTGTGCTCGCCAAAAgaagagtttaa
Protein Sequence: MYRQRNVKEKGEMQKRGKEEAWSGGGMTVKSGSDQGQENEAQADAASSPSSIDLPESAHPCPACPTVLSTSRELTNHLRGHSSPRSTDCSGEDDYCCGICNKVLSSASSLDRHLRTAHRTTSPHSCTDSEGSSDSDKSSKRRHLEEYNNNEITKRNSPDFIEGQEERSPTLPGKRKCSDYLSDNEGQKRHKILLNNSRTEIKSIPDDNQNAYNCPVCGRQDFATSALLEAHLERCHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSIGNTARNLRNSVVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVTKFQCSKCLRAFPCRSALDAHETDCGTTNSQIRTTDDSQSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPESNIKFNPSVSSSGSSGTYSSEYHEEEAQDAFAAEFRKMKLKGEFPCRLCSAIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLIRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERSSPRVLKEEVRKSLIYSTEREEFHHQAQIHYPPVPIDVRTEIRIIEEAKLHNSTMSVHNTNHFEKNEIFSRPNQAIELSQRNIDEGKSSQDIKPDYSKLDDELDSRSSDDLASLVNDVKSDSHQRVQASPINLKKGLNMAENSGEDGPLDLSMDVLDLSKKSKEKENNDFISRDKFNKTEKDLYATSQLLLTEALLKAGQGSTQSASLEALYANAIYRNFSTFPTGTGILPPYMFNPHVFNQDYCMKERLQKELVRGLQLTSGGSLVEPSMPSATGFNNFSQNRDMNSQSITEQSEYAKLISSKMVNKSLTHRDKQDNLASSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSHPTLLQNLGQTSQVTQSFNILPKINEQSMSSEFAKHSISDQVKYAILAQQLKTNKVEENDSEEELIIDEDPQDKEDDKSQDQKEKSLLRDQLEITDSISMKEEDKKSMHDSKETNEIEKNEKMINEKKKESKMEKSETKTSIDKCPNTVLKIEIKSEKIEDGVTDLASVSELLDNASQQYQQFQPQYLSDEEGLAASNSDCNNSGSDEKSDSINSSNSINNPSKKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKIRRIRNSSSPDSQTMINNNNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKIKPRSDTPSSEPQNSPQECRKQNNEQTDYDSQSSSISEGTETSSIPRIPKSTSNISPSANDVPRSRKASPRSSPGPGDVPFKCHLCDCGFAERQDCLEHIKINHKRSYEMLMAKGALDMEIGDTVEDHQQLPLHQTSDGEEKKGRFPDYSNRKVVCAFCIRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYIGTSGDEENSPTQPPTITPRSQQQQPILLATNNGNSLIQDRISLPTVASVATGDAAPSGLMRFNPYEKLTTLTGKLASIPQNVNPEANENMDNDLISNLLGIRDKNFMDRVLQGTADDAAKLLGQKRLRTNRRVLAKRRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00140804;
90% Identity: iTF_00140804;
80% Identity: -