Basic Information

Insect: Apis laboriosa
Gene Symbol: salm
Assembly: GCA_014066325.1
Location: JACEOM010004376.1:6698777-6710797[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.2e-06 0.00081 20.7 0.9 1 23 375 397 375 397 0.98

2 9 8.4e-06 0.0016 19.8 2.1 1 23 403 425 403 425 0.98

3 9 0.053 10 7.8 3.8 2 23 826 847 825 847 0.98

4 9 3.7e-08 7e-06 27.2 0.6 1 23 853 875 853 875 0.97

5 9 5.1e-05 0.0097 17.3 2.6 1 23 885 907 885 907 0.98

6 9 0.0018 0.34 12.5 1.9 2 23 1244 1265 1243 1265 0.97

7 9 0.026 5 8.8 1.0 1 14 1271 1284 1271 1285 0.92

8 9 4.9e-07 9.4e-05 23.7 2.1 3 23 1483 1503 1481 1503 0.96

9 9 1.7e-07 3.2e-05 25.1 0.9 1 23 1509 1531 1509 1531 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.2e-06	0.00081	20.7	0.9	1	23	375	397	375	397	0.98
2	9	8.4e-06	0.0016	19.8	2.1	1	23	403	425	403	425	0.98
3	9	0.053	10	7.8	3.8	2	23	826	847	825	847	0.98
4	9	3.7e-08	7e-06	27.2	0.6	1	23	853	875	853	875	0.97
5	9	5.1e-05	0.0097	17.3	2.6	1	23	885	907	885	907	0.98
6	9	0.0018	0.34	12.5	1.9	2	23	1244	1265	1243	1265	0.97
7	9	0.026	5	8.8	1.0	1	14	1271	1284	1271	1285	0.92
8	9	4.9e-07	9.4e-05	23.7	2.1	3	23	1483	1503	1481	1503	0.96
9	9	1.7e-07	3.2e-05	25.1	0.9	1	23	1509	1531	1509	1531	0.98

Sequence Information

Coding Sequence: ATGCAGCTCATGAGATGGAGCATCACGCGCCGCCTCGAGTGCAGGGGGATCAAACAGGGGACATCCAGGCTATCGTGCCCCCGATTTTCCGGAGAGGAAAATGATTTTACGTCGGATGGAGAAGAGAGTGGCGGTGCAGGAGCTGGCGGAGACGAAGCCGTGGACCTCACGGCTGCCAGGTCTCATCAAGACGAGGATGACAAGGATCAGGAAGACGTTTTGGAGGAGGATGAGGAGGAAGGCGTGGACGAGCAGGACGATCAAGAGGACGACGAGGAAGGATCGAGGAAGCAAATGCATCATAGGCAGGATGCTgagaataacaataatttcgtGGAAGGTGGGACACCGGCCGGCTTATTCCCACCGGCTGGAACTAGTCACGTCACCTTGGAAGCCCTTCAGAACACGAAAGTGGCGGTCGCTCAGTTCGCAGCGACAGCGTTGGCCGGTGGCGCGGACACCGAGGCTGCTCTCCAAGATTTGGCGCTGCTGCAAAGCACCCTGTACACCCTGCAGCATCAACAAGTGTTCCAGTTGCAGTTGATCAGTCAACTCCAGCAGCAACTGTCCATAACGCATAATCAAACGGTGCAACAGCAAGCACCGGGCGAGCCGTCGGACAGCAAAGAGATATCACCGTCGCCGATCATTCAGCCCAAACCTTTATCGAGCCTTACTTCGCCTCCCTCGTCGCGCCCGCCGAGCCACCAGCAAACCTCGCCAGCTCCGATGACGCCCAACCTCGCCCAGGAACGGCCCACACCGACCAGCAGCGCGTCCCCGTTGAACCTTCCCCTGGCTTCGACGAACGCGACAGGCACGACCGCGACCACCAGCACCAGCAGCCAGGTGCCTATGTCTCATCAGATTCCGCCTCTCTGCTCGATCAGTTCTTCCTTAGCTTCGTCGATAATAACCAACACCGATCCCCCACCGTTGCACGAGCCGAATACCCTGGAGATGCTGCAGAAGAGAGCCCAGGAAGTTCTGGACAACGCCAGCCAAGGACTGCTGGCGAACAACCTGGCCGACGAGTTGGCGTTCAGGGGAGGGAAAGGCTCCCGCCTCTCCCCGTACGACTCAAAGTCCGGAAGCGGTCGCGGGGAGCCGTTCTTCAAGCATCGTTGCCGGTATTGCGGCAAGGTGTTCGGCAGCGACTCGGCGCTTCAGATCCACATACGATCGCACACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGCTTCACCACGAAAGGGAACCTCAAGGTCCACTTCCAGAGGCATACGGCCAAGTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCATCCACCCCTGCTACAGCAAATCGCCTCTGGTCAGAGACCGATGCCGTCCccgccaccgccaccgccCTCTCACCATCCCTCCTTCCACCCGGCGGCGGCCCACGGTTTTTTACCCCCCCAACCTCCCCTGCCGCTCAGCCTAGCCCTTCCCGGTATGCCGCCCCTGTACAGATCGCCGGTTGTTGCTCATCGGGACGATCAGGACGTGCCGGAGAACTTGAGTAAACCCGTTACCACTGCCCCGACCACGTCCCCACATTCCCCCGCGGTTGTGTCCAACTCTCGTCATTCCTTTCACGACAATCACCTCCACCATcatcaccaccatcaccaacaacaacaacaacaacaacaacaacaacaacatcatcatcatcatcaacaacaacaacaacaacaacaacaacaacagcagcagcagcagctaCAAAAGCAGCAACAACTCGAGCAAAGGGACGAGATCAAGCTCGAGCACCGATCGCCTATGCAGGACCAGTATCAACACCAACGGCCCACGAGTCACGAGCCCGCCGAGAGGATAACGCCTAAGAAAGAGCCGGAGGAGGCCGAGGAGCCGACGGAGGAGGATAGCGAGGATTTCGAAGAGACGACCAGACGGTATTTGAATTCACCCCAATCCTCTGTCAATCCACCCTCTCAACCGCAAACTTACGAAGACTGTAGCATGGACAGTAAGATGAGCGGCCGACTCGAAGGTGACGCCGACATGGAGGTGGACGAGGAGATCGAGGAACAGCCCGAAAATTTGTCCGGTCGGGGAACGATTAATCGTTTGCCGCAGCACATTGTCGCGTATCCCGGAGCATCCCCCGCGAGCAGTAGCGCGAGCAGCGGTAGCCTTCAAACATCCTTCGCGGGGATTCTGTTCCCAGGGCCGCCCGCGCATCACCAAATACCGCACCATCCAGCCCCAACTACGGTAAACACGTCCGCCGTCAATACGAACGAGATGATCGACCCGGCCAAGGATCCAGCCATCTATTCCAGCCTGTTGCCACGGCCGGGCAGCAACGACAACTCGTGGGAAAGTTTGATCGAGATCACCAAGACCTCGGAAACGTCCAAGTTGCAGCAACTGGTGGACAACATCGAGCACAAATTGACCGATCCGAACCAGTGCGTGATTTGCCACAGAGTCTTGTCCTGCAAAAGCGCGTTGCAGATGCATTACAGGACCCACACGGGCGAGCGGCCGTTCAAGTGCAAGATCTGCGGCCGGGCGTTCACCACAAAGGGTAACTTGAAGACTCACATGGGCGTGCACAGGGCGAAGCCGCCGCTCAGGGTGTTGCATCAGTGCCCCGTTTGCCACAAGAAATTCACGAACGCGCTGGTGTTGCAGCAACACATACGGCTGCACACCGGCGAGCCGACGGAGCTCAGCCCGGAGCAGATTCAAGCCGGCGAGGTGAACGAGTTCCCGCCCGGCTATCCGCCCCACCCGCTGGCATCCTTCCTCCCGCAGGGCTTTCCACCCATTCACCCTGCCGGAGCCGGCTTCCCCTTGAGTTTCCCCCCGACACGGCAACAGGCGTTGGAAAGACAGGCTCAGGAGAACGACGTGGACGGGAAGGACGAGCCGCAGCATCAGCATCAGCATCAGCATCAGCATCAGCACCAGCACCAGCATCAACACCAGCATCAGCATCAGCATCAACATCAGCATCAGCATCAGCATCAGCATCAGCTTCAGCTTCAACAtcagcaacaacagcagcaacagcagagGTACACGGGCGAGGAGCACAGCGAGGAAGCGGATGATCAGGATGACGAGGAGGATGATCGTAGGGAGGAAGACGAGAGGTGTGCCATGAATCGCGATGGTCGTGGCGACGTGGAGGACGAGCAGGATCGCGAGAGCGAGGATAACGAGCACAAAGAGATCTCTTTACCGAGTTTCTCCACTTCTTTAGCAGCTCTGGAGAACCAAGTTCGAACGATCACAACGACGGCCACGTCGACGGCAGGGAATATGGCCAGGTCGCCCCCGTTTCACCGGTACAACGGGAGCGAGAAGAGCAACAGCCCGATGAATTCGGGGGCCCCGTTGGACTTGACACCCCGGGCATCGTCCACTCCCGCTTCGGTGGCTTCCGTGCCAACGCCACCTCCGCAAACCACGACCCAACACCCGCACCCGTTCGGCATGTTCGCAGGCCTGCTGCAAGCGGTCTCATCGTCGCCGTCTACCAGCAGCATCGGTTCGTCGAGCATAAACAGCGTGAGCTCGATGAACGCCGTGACTCCTGGAAGCGGCGCCGCCGGACCCTTGGCTTCCCTGACCACGTCAGCCGTGTTGGCTGCCACGTCGACCTACAATCCGCTCGGCCTGGCTGTCGGAGGGCCAGCAGTGCGTGGAAACACCACATGTAATATCTGCTACAAGACATTTGCGTGCAACTCCGCGCTGGAGATCCATTACCGGAGCCATACGAAGGAACGACCTTTCAAATGCACCATATGCGACAGAGGATTTTCGACCAAGAACGATGGTTCCGGGCAGCAAGCATGCGTCTGTGCGTCTCAACCGTTGCCCGCTAACAGTTCGATCACTTCACCCGATCCTCAATTCGGATCACCGTGCGCCAGTAGTCGAGAAAAAGCGAAACGCAGGCGGCGGCGGCGACCTGAGGATCGGAAGAACCGGGGGCGGAAAGGAGCTGGAGGGGGGCGGGGGCTTACGCCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCGCCCGCCCTCGGACTTCTACCCTCGGCGCACAGCCTCCTGGGGAATATGAAGCAGCACATGCTGACCCACAAGATCCGAGACATGCCGCCCCATCTGTTCAGCGACTCGaagcaacagcaacagcagcagcagcagcaacaacaacagcagcaacacCAGCAACAGTCTCAGGAGCACGAGACCTCGAGAAGTCCTATGTGCGCCGAGGACTCGAGCTTACCGCCGCCTCCGCCGCCTCCGCCACCTCCTCCCCCGATGCCTCCTACCTCGATAGAGCAGAGCATCGCCGTGAAGAGATCTCCGCCCGAGGGAGAGCTGCCAGCGCCAAAGAGACCAGCCAGCGTGCCGAGCAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACTCACACGGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTCAAGGTGCACATGGGCACGCATATGTGGACCAACGGGGCTTCCCGACGAGGCCGTCGAATGTCCCTGGATCTGCCTCCCCTACCCATCACCCCCAAGGACTCGGAGTTCCTCCAGCGACGGCCGGATCTTTTCTATCCCTATCTACCCGCGCCATTCCTTAACGGAGTACAGCAGAAACTGAACGAGATCTCGGTGATACAGAGTAACAACGGGTTACCGAGCCACTCGGTGGCCGCAGGCAAATACGCGGGATTGTTCGGCTCTGTGTACGCTGCTGGCGCCGGATTCCCACTGGATAAGCAGCCAATGGCGGCGTCCAGCAACGGGCCGTCGTTGCTCGACGGCAAATCCTCCATTCCATCCGGATCCATGCTCTTCCAGACACCGTCGCCCTCCCACTCGCCCGGCACGCCAGGCTCCAACGGGAGCAATCAGAACAGCGCCAACGTGTCCTCGTGGACGGGTGACGCTCTTCAGCACCAGCTCTTCGACCGAGAACCGCCCGCCAGGTCGGAAGGAAACTCGACACCGCCATCCGCTCGACTTCCGCCACCCCCCGCGGCCAGGGGTGAGGGACTGGCCACGTGA
Protein Sequence: MQLMRWSITRRLECRGIKQGTSRLSCPRFSGEENDFTSDGEESGGAGAGGDEAVDLTAARSHQDEDDKDQEDVLEEDEEEGVDEQDDQEDDEEGSRKQMHHRQDAENNNNFVEGGTPAGLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADTEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHNQTVQQQAPGEPSDSKEISPSPIIQPKPLSSLTSPPSSRPPSHQQTSPAPMTPNLAQERPTPTSSASPLNLPLASTNATGTTATTSTSSQVPMSHQIPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPLSLALPGMPPLYRSPVVAHRDDQDVPENLSKPVTTAPTTSPHSPAVVSNSRHSFHDNHLHHHHHHHQQQQQQQQQQQHHHHHQQQQQQQQQQQQQQQLQKQQQLEQRDEIKLEHRSPMQDQYQHQRPTSHEPAERITPKKEPEEAEEPTEEDSEDFEETTRRYLNSPQSSVNPPSQPQTYEDCSMDSKMSGRLEGDADMEVDEEIEEQPENLSGRGTINRLPQHIVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHPAPTTVNTSAVNTNEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPPHPLASFLPQGFPPIHPAGAGFPLSFPPTRQQALERQAQENDVDGKDEPQHQHQHQHQHQHQHQHQHQHQHQHQHQHQHQHQHQLQLQHQQQQQQQQRYTGEEHSEEADDQDDEEDDRREEDERCAMNRDGRGDVEDEQDRESEDNEHKEISLPSFSTSLAALENQVRTITTTATSTAGNMARSPPFHRYNGSEKSNSPMNSGAPLDLTPRASSTPASVASVPTPPPQTTTQHPHPFGMFAGLLQAVSSSPSTSSIGSSSINSVSSMNAVTPGSGAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNDGSGQQACVCASQPLPANSSITSPDPQFGSPCASSREKAKRRRRRRPEDRKNRGRKGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHSLLGNMKQHMLTHKIRDMPPHLFSDSKQQQQQQQQQQQQQQHQQQSQEHETSRSPMCAEDSSLPPPPPPPPPPPPMPPTSIEQSIAVKRSPPEGELPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPSHSVAAGKYAGLFGSVYAAGAGFPLDKQPMAASSNGPSLLDGKSSIPSGSMLFQTPSPSHSPGTPGSNGSNQNSANVSSWTGDALQHQLFDREPPARSEGNSTPPSARLPPPPAARGEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118182;
90% Identity: iTF_00140803;
80% Identity: -