Basic Information

Insect: Apis laboriosa
Gene Symbol: -
Assembly: GCA_014066325.1
Location: JACEOM010004364.1:6805970-6830408[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00063 0.12 13.9 2.5 1 23 366 388 366 388 0.98

2 9 4e-06 0.00077 20.8 1.7 1 23 394 416 394 416 0.98

3 9 0.00011 0.021 16.3 2.1 1 23 421 444 421 444 0.98

4 9 3.5e-05 0.0067 17.8 0.9 1 23 450 472 450 472 0.97

5 9 0.00024 0.046 15.2 0.5 1 23 478 501 478 501 0.97

6 9 0.00038 0.071 14.6 0.8 1 23 511 534 511 534 0.97

7 9 0.00078 0.15 13.6 2.0 1 23 538 560 538 560 0.94

8 9 1.4e-06 0.00027 22.2 0.1 1 23 566 588 566 588 0.99

9 9 1.7e-07 3.3e-05 25.1 2.4 1 23 594 616 594 616 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00063	0.12	13.9	2.5	1	23	366	388	366	388	0.98
2	9	4e-06	0.00077	20.8	1.7	1	23	394	416	394	416	0.98
3	9	0.00011	0.021	16.3	2.1	1	23	421	444	421	444	0.98
4	9	3.5e-05	0.0067	17.8	0.9	1	23	450	472	450	472	0.97
5	9	0.00024	0.046	15.2	0.5	1	23	478	501	478	501	0.97
6	9	0.00038	0.071	14.6	0.8	1	23	511	534	511	534	0.97
7	9	0.00078	0.15	13.6	2.0	1	23	538	560	538	560	0.94
8	9	1.4e-06	0.00027	22.2	0.1	1	23	566	588	566	588	0.99
9	9	1.7e-07	3.3e-05	25.1	2.4	1	23	594	616	594	616	0.98

Sequence Information

Coding Sequence: ATGTCCTCCCTCGATTATCTGGACTTGTGTCGATTATGTCTCGTGAAGGACCGTGTTTCGGTGCCAATTTTCGAGGGTGAAGGAGACGTACGACAAATATTTCTCAAGATCGCTGCCTGTCTACCGGTCAAGCTTACAAGAGAAGATAAGTTACCTAAGAAGATATGCGATGATTGTGTGTATaaagtagaattattttatcaattttggaATACAACAGCAAACGCAGAAAAACAACTTTTGCAATGGCTAGGAGAAGTCAGTTTAGAAGACAAACAGGGTTATGTTACCAATGTTCTCAATCcgAGTGTAATGAAACAAGAACAGAGTACAGAGAACAGGTTAGATGGCAATGTGATGCAGCAAGTAGAGGAGCATCAAAACAATATGGGGATGGGTATGATGGATAACATGGGTTTGGGTATTCCCATGATAATATCCAGTGCTAATCAACAACAAATCACCTCAGTTCCTATGGACACCAGCAGCAATTCTGTACAAACTATTCAGGCAGTACCTGGTCCAAGTTCACAAACTACACATAACCAAATACCACAGAATCAAACAAGCTCTACGCAACAAGAAGATGAAGAGGAAAGTAgtgaagatgaagaaaattctGACGAAGAATGCGATGGAGATGAAGgCCTACctgtaaaagaagaaagtgaaGAAGATCCCAGCAATAGAACCATAGAGCCTACTACTTTTGTAAATGTTTCCTTGGCATGTGATGAAGCAGGTCCTTCAGGACTGCAGCAACAGAAGATCTCAGATATGCCTGAGATGCCAATTCCACAGCCAGCTGATGGGGATCCCAAATCTGGAGAACTCGGGAACGTAGATTGGGACGTGAAATCCGAAGCCAGCAGTGAGAGGACCATCGAGGTCTTGGAATCAGAACTAGAACCGCTTCCATCTCCGCCGGATCCGCACGCGTACTGCGAATCGTCCGAAGATAATCCTCGAGTCGATACGCCCCCCTCGAACACTTGTCCTACCTCTGTAAACGGTGGGAACGGTGATCGAAcgagaatgagaaaaatacCGACGAGGTGGCACGGGTTCGAGGACGACGAGGAGAGGCAAAAACGTTACACCTGCTCTGTCTGCGAGCTGGAATTCGCTAAGCACAGGGATTACAAGCGTCACATGGTGAAGCACAGTGACGCCCGCCCCTACATATGCGCCACCTGCGGCAAAGCTTTCAAACGTTCCTCGGAGATATGCAATCACAGGCGGATCCATCGTGATATCAAGTACTCGTGCGAGATATGCGGCTTCACGACCAACAACAAGATCTCGTTGAGGATGCACCATCGGCGTGTCCACGAGCGTGATTATCGTTACCGTTGCGACCAATGCGACAAGGGTTTCATGTCCAACTACGATCTGGAGGATCACAAGACCAGCCATCTCGAGACCAAGGCGTTCATCTGCGAGTTCTGCGGGAACGGTTACTCGCAGAGATCGTATTTGGTATCTCACAAACGGGTGATGCACGGGATCAAGATGAGCACGCCCAAGGCGTTCCAGTGCAACATATGCAACAAGAGAAGCTTCGCCACTGAGCAGGAGCTACGCAGCCACTTGAATCTGCACTCCCAGATGTTCCTGTGCGCGGAATGCGGCCAGAAATTCGCGACCAACTACGCTCTCAAGCTTCACTGCCGGAGGCACACCGGGGAGAAACCGTATCAGTGCCCGTTCTGCCCGAAAGCTTTCGCCAGGTCGCCCGCGCTCAGGGTCCATAAACTTACCCACACGGGGGAGAGGCCGTACGTGTGCAACATATGCGGGCAGAGTTTTACGCAGAGGAGCAGTTTGATGGTGCACCACAAGAAGCATCCTGGAAATCATCCACCGCCCCCTCCCCTGCCGCTCACCAGACTCGCCAAGGACGCGAACAAGTCATAG
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKIAACLPVKLTREDKLPKKICDDCVYKVELFYQFWNTTANAEKQLLQWLGEVSLEDKQGYVTNVLNPSVMKQEQSTENRLDGNVMQQVEEHQNNMGMGMMDNMGLGIPMIISSANQQQITSVPMDTSSNSVQTIQAVPGPSSQTTHNQIPQNQTSSTQQEDEEESSEDEENSDEECDGDEGLPVKEESEEDPSNRTIEPTTFVNVSLACDEAGPSGLQQQKISDMPEMPIPQPADGDPKSGELGNVDWDVKSEASSERTIEVLESELEPLPSPPDPHAYCESSEDNPRVDTPPSNTCPTSVNGGNGDRTRMRKIPTRWHGFEDDEERQKRYTCSVCELEFAKHRDYKRHMVKHSDARPYICATCGKAFKRSSEICNHRRIHRDIKYSCEICGFTTNNKISLRMHHRRVHERDYRYRCDQCDKGFMSNYDLEDHKTSHLETKAFICEFCGNGYSQRSYLVSHKRVMHGIKMSTPKAFQCNICNKRSFATEQELRSHLNLHSQMFLCAECGQKFATNYALKLHCRRHTGEKPYQCPFCPKAFARSPALRVHKLTHTGERPYVCNICGQSFTQRSSLMVHHKKHPGNHPPPPPLPLTRLAKDANKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -