Basic Information

Insect: Apis laboriosa
Gene Symbol: -
Assembly: GCA_014066325.1
Location: JACEOM010000036.1:3440384-3444501[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2e-06 0.00038 21.7 1.7 1 23 293 315 293 315 0.98

2 9 1.9e-08 3.7e-06 28.1 1.6 3 23 323 343 321 343 0.98

3 9 0.00015 0.028 15.8 0.4 1 23 349 371 349 371 0.98

4 9 8.3e-07 0.00016 22.9 1.5 1 23 377 399 377 399 0.99

5 9 1.5e-05 0.0028 19.0 1.7 2 23 513 534 512 534 0.96

6 9 1.9e-09 3.6e-07 31.3 1.6 1 23 540 562 540 562 0.98

7 9 0.00042 0.081 14.4 0.6 3 23 570 590 568 590 0.97

8 9 5.6e-05 0.011 17.2 1.4 1 23 596 618 596 618 0.99

9 9 0.013 2.4 9.8 0.8 1 23 624 648 624 648 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2e-06	0.00038	21.7	1.7	1	23	293	315	293	315	0.98
2	9	1.9e-08	3.7e-06	28.1	1.6	3	23	323	343	321	343	0.98
3	9	0.00015	0.028	15.8	0.4	1	23	349	371	349	371	0.98
4	9	8.3e-07	0.00016	22.9	1.5	1	23	377	399	377	399	0.99
5	9	1.5e-05	0.0028	19.0	1.7	2	23	513	534	512	534	0.96
6	9	1.9e-09	3.6e-07	31.3	1.6	1	23	540	562	540	562	0.98
7	9	0.00042	0.081	14.4	0.6	3	23	570	590	568	590	0.97
8	9	5.6e-05	0.011	17.2	1.4	1	23	596	618	596	618	0.99
9	9	0.013	2.4	9.8	0.8	1	23	624	648	624	648	0.95

Sequence Information

Coding Sequence: ATGTTCGTTTTAGGAAGTGATTTCCAAGATACTTATACTGGCGCGCCCTACGTATTATACAAGGACAACATGGAGAGACCCCAGGGGCAATGGGGCCCCGGGCCGGGATCTCTCCAGGACGGGGGACTGTACCcgcagcaacagcaacaacagcaacagcagGGCTCCTCCTCGTCCGGCAGCCCACAGCAGGCCTGTGGTCCCCCTGTCGAGGGAGAAAGCGGTCCCCCGCCTTCGTTGGCCTCTCCCGTGCCCTCACCGTACCCCTCGGCACCGCCTGAGCCTCAAGCCTTAACCCCACCCGACGACGATATACAATCGAATCAAGCCACCTctcaacagcagcagcaacagcagcaacaacaacaacagcagcagcagcagacGCAACAACAAgtgcaacagcagcagcagcagcagcagcaacaacaacaacagcagcagcagcagcaacagcagcagcaagttcaacagcagcagcagcaacaacaacagcagcagcaacaacaacaacagacGCAACAGCAGGACCACTCGCCCCAACAACAATTAACCCCCCACGAGGTGGATCGCGCGGATTGTTTCCCCGGGGCGGGAGAGCTGCAGCAGTATCCGCAGCACTACTTCAAGGATGCCAGGCCGCATCCGTCGCCGTCGGTGCCACCGCACATGCTGACCCCGGGTGGTTTCTCCGCGTTACACTATCTGAAGCAGCCGGGCGTGATGCTGACGTCCCTCGGGCAGGGGGACGGTGGACCCAGCCTGGACGCGCACCAATACGCGAGCCCCGGGGCACCGAACATGGCGACCGGGTTGCCGGACATAGTCCAGCAGAGCGGCAAGTCTGGGAAAGGGGCGAACAGCGACCTACGTTTGTTCAAGTGTTTGACGTGCGGGAAAGATTTTAAGCAGAAGTCGACGTTGTTGCAACACGAGCGGATCCATACGGACAGTCGGCCATACGGGTGTCCAGAGTGCGGGAAGCGGTTCAGGCAACAATCGCATCTAACGCAGCACCTGCGCATACACGCGAACGAGAAGCCGTATGCTTGCGTGTACTGCGAGCGTACGTTCCGGCAGCGTGCCATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCGCATCTAATCTTCAAGAATGGGATGACTCCGACACTCTGGCCCCAGGACGTTCCGTTTCCgcaggaggaggggaaggaggaggtgGGATCGACGTTCGGCGACACGGACACGCAGTCGGGCGCGTTCAGCCCGGCGCCGGACGCGAATTCGATCCAGTATCCCGCCTACTTCAAGGACCCGAAGGGCGGGAATCACGCGGTTTTCGGCGCGGGTGGCACGGGTAGCTTCGGCGCTCTCCAATACATCAAGCAACAAGGCGGTAGCAAGAGCTGTTTGCCGGACGTGATACAGCACGGCCGCTCCGCGGGTATGCCGTTGTACGTTCGGTGTCCGATCTGTCAGAAGGAGTTCAAGCAAAAGTCGACGTTGCTGCAGCACGGGTGCATACACATCGAGTCGAGACCGTATCCCTGCCCCGAGTGCGGCAAGAGGTTCAGGCAACAGTCCCACTTGACCCAACACCTTCGCATCCACACGAACGAAAAGCCGTACGGGTGCGTGTACTGCGGCCGTAATTTCCGCCAGCGCACCATCTTGAATCAACATTTGCGCATCCACACGGGGGAGAAGCCGTACAAGTGTCAACAGTGCGGCAAGGATTTCCGTCAGAAGGCGATACTGGACCAGCACACGCGCACCCACCAGGGTGATCGGCCGTTCTGCTGCCCGATGCCCAACTGCAGGCGGCGTTTCGCAACCGAGCCCGAGGTCAAGAAGCACATCGACAACCACATGAATCCGCACGCGGCCAAGGTGCGCAGGAACTCGAGCAGCGACTCGAAACCGCCTGGCACGCCGGCCGGCCTGGGCCCCGTCCCCGTCCCCAGAGGGTTGACGCCGACCGTGGTCAAGCCGGAGCTCTACTTCCCCCAATGTTACGCGCCCGCGTTTAATCACCAACCCCCGGTGTCGACGGCGCAGTTCCCGGCCCAGGCGAACGGGGTGTCCGTCGCCGGCGAATTCAAACCACCGACCGGCCTGCCGCCGCAGTGA
Protein Sequence: MFVLGSDFQDTYTGAPYVLYKDNMERPQGQWGPGPGSLQDGGLYPQQQQQQQQQGSSSSGSPQQACGPPVEGESGPPPSLASPVPSPYPSAPPEPQALTPPDDDIQSNQATSQQQQQQQQQQQQQQQQTQQQVQQQQQQQQQQQQQQQQQQQQQQVQQQQQQQQQQQQQQQQTQQQDHSPQQQLTPHEVDRADCFPGAGELQQYPQHYFKDARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPSLDAHQYASPGAPNMATGLPDIVQQSGKSGKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPQEEGKEEVGSTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGNHAVFGAGGTGSFGALQYIKQQGGSKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSSDSKPPGTPAGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPAQANGVSVAGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01418493;
90% Identity: iTF_00684322;
80% Identity: -