Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.2e-05 0.00071 19.0 0.1 2 23 109 130 108 130 0.96

2 6 3.2e-06 0.00019 20.8 3.5 1 23 136 158 136 158 0.98

3 6 9.4e-07 5.7e-05 22.5 2.7 1 23 164 186 164 186 0.99

4 6 0.00035 0.021 14.4 0.3 1 20 192 211 192 214 0.93

5 6 2.6e-06 0.00016 21.0 0.7 2 23 221 242 220 242 0.97

6 6 4.8e-08 2.9e-06 26.5 0.5 1 23 248 271 248 271 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.2e-05	0.00071	19.0	0.1	2	23	109	130	108	130	0.96
2	6	3.2e-06	0.00019	20.8	3.5	1	23	136	158	136	158	0.98
3	6	9.4e-07	5.7e-05	22.5	2.7	1	23	164	186	164	186	0.99
4	6	0.00035	0.021	14.4	0.3	1	20	192	211	192	214	0.93
5	6	2.6e-06	0.00016	21.0	0.7	2	23	221	242	220	242	0.97
6	6	4.8e-08	2.9e-06	26.5	0.5	1	23	248	271	248	271	0.98

Coding Sequence: ATGACGTCCATGTTTGAACAACAAATCAAAAGTGAACCCATGGGGTTTTATTCTGTTGCTTCAAGCCGTTCGGATGGTTCAAATTCTATGGTGAATTTATCTGATGATCGTGAAGATCTTTCACAACAAGAAGGTCATCTACAAGCCCAGCAGCAGACAACATTACAGTTAAACCAGCAACAGGGTCAACAACAAACTCAACAACAGAATCAGCAAACGCAGCAGGGTCAACAACAGCAGAGTCAGACTGTGCAACAGGAAGTTCCAAGCCGTCAGTCGACAGGACAACAGACAGTTAAAGAAGGTTCACGGTCAAAGCCACAACCTTGTAAGGTATGTGGCAAGGTGCTGTCTTCTGCTTCATCGTACTATGTACATATGAAACTTCATTCGGGCAACAAACCATATCATTGTACAGTATGCGAAGCAAGTTTCTGCCGGAAACCATATTTGGAAGTGCACATGAGGACGCACACAGGAGAACGACCCTTTCAATGTGAGTTGTGCTTGAAAAGGTTTACTCAAAAAAGCAGTCTTAATACTCATAAAAGAGTGCACACAGGAGAGAGACCATACGCCTGCGACATTTGTCAGAAACGTTTTGCAGTGAAAAGCTATGTGACGGCACACCGTTGGAGTCATGTTGCCGAAAAGCCTTTGGTGTGCGATAGATGTTCTCTCACATTCACGTCCAAGAGTCAATTCGCAATACACATCCGTACCCATACAGCAAGTACTACGTACGAGTGTAACATATGCGGACGTACATTTGTACGTGATAGTTATCTAATACGGCATCAAAATCGAGTACACCGCGATATGAATCAAAGCAGTACGAATCATAATCCACCTACACCTCAAAGCACTGGTGGTGGTACACCAGGTACGGGCTTCGAAAGTCCAGTTTGTGATTTACGCTACAGCGAAGGACCTTCCTCGTTGGACGGATTGACCGGTTCTAAAGGAGGGATCGCGGCTGAAATCGCAAGTTTAGCCAAGCAAAATAATCTTCAACTTCCTCTACCATTGCTACATCCGCAGACTACCAACTAG
Protein Sequence: MTSMFEQQIKSEPMGFYSVASSRSDGSNSMVNLSDDREDLSQQEGHLQAQQQTTLQLNQQQGQQQTQQQNQQTQQGQQQQSQTVQQEVPSRQSTGQQTVKEGSRSKPQPCKVCGKVLSSASSYYVHMKLHSGNKPYHCTVCEASFCRKPYLEVHMRTHTGERPFQCELCLKRFTQKSSLNTHKRVHTGERPYACDICQKRFAVKSYVTAHRWSHVAEKPLVCDRCSLTFTSKSQFAIHIRTHTASTTYECNICGRTFVRDSYLIRHQNRVHRDMNQSSTNHNPPTPQSTGGGTPGTGFESPVCDLRYSEGPSSLDGLTGSKGGIAAEIASLAKQNNLQLPLPLLHPQTTN

Sequence clustering based on sequence similarity using MMseqs2