Basic Information

Insect: Apis cerana
Gene Symbol: Sall1
Assembly: GCA_029169275.1
Location: CM054910.1:651074-652777[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00012 0.013 16.5 0.3 2 23 304 326 303 326 0.92

2 4 0.00017 0.02 16.0 0.1 2 23 352 374 351 374 0.97

3 4 0.00011 0.012 16.6 0.9 3 23 400 420 399 420 0.99

4 4 8e-07 9e-05 23.3 1.7 1 23 426 449 426 449 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00012	0.013	16.5	0.3	2	23	304	326	303	326	0.92
2	4	0.00017	0.02	16.0	0.1	2	23	352	374	351	374	0.97
3	4	0.00011	0.012	16.6	0.9	3	23	400	420	399	420	0.99
4	4	8e-07	9e-05	23.3	1.7	1	23	426	449	426	449	0.95

Sequence Information

Coding Sequence: ATGGCCATCGCTGCTTCAGAGAATTATCAACTTAAATGGCACAGCTATGGTGCTCATCTGCACAGCTCTGTCGCGACATTACTCCATTCAGAATCCTTCGCAGATGTCTTGTTAGCAACATCCTGTGGTCGGCACGTGGCGGCTCATCGATTTGTCCTTGCCGCTTGCTCTTCGTATCTTagtcatatttttcaaacatgtCATTTCGGTGCAAATACAAACGCTCCAATAATTGtgGTATTACCAACAGAAATTGGTTATCGTACATTAAAAATACTgattcaatatatgtatagtgGTGAAGCTACGGTAACAAATGATCAATTAGAAGGTGTATTAAAAGCAGGCGATATATTACGTGTACGTGGTTTATGGAGATCTAATACtggaagtaaaaaagaaaatatacaatcgAATAATCAGAAAATGGATAGAGAAAAACGGGAGCAGCCACCTTTAACTggtcaaattcaaaaaatcaaattggTTCAACCGAGCGcggaaaaaattgttgaaaatacaCAACAGAATACaccaatacaaaataatattcaacctCAAAAACCTATgtcagaaagaaaaagtattgaaaaaattgaagagaaaaCTAATGAACCAGAATCTAAAAAGGTTttagaggaaaataaaaataatgaacaaaataaaaataaagaaaatgtggAAAACaatggtaaaaaaagaaaaacaaccaATAGTGATGTAGaatctaataaatctaaaagtgAAGATGGCGAAAATACTGAATTGAATTTAGAACTTTTAGTAAAAGACGAACCAATTTGGGAAGAAACTATTGATCCGTCAGAATCATTAACGATAGATCACGAGATTGATATAAAACcgGAAATCGTACATAGTgcagatgaagaagaagaatacaGCCCGTTAACATGCGATATGTGCAGTCAAACATTTAATCGACCATCAGATTGGGTACGACATATTGAATTTACACATGCTGATATGAccgaaaatcgaagaaaaaagaggaaggGCGACGTAGATGACGATAGCAAAGATTTTCCACCTTTAAAATGTGATCTTTGTGGTAATATGTATTCAACACCTCAAGAATGGGTACGTCATATACAAACCGAACATACAGAAGAGCAATTAGCTCTAATGAATAACTCAGCGCCTCCTAAACCAAAAAGAGTTCATAGTCATCAAAAATTGTGTAACATTTGTCAAAAAGAATTTCCAAGCCATGCGTCAATGGTAATTCATCAAAGAACGCATACGGGGGAAAAGCCTTTTCTTTGTTCCTATTGTAAAAAAGGCTTTAacgtaaaaagtaatttattaaggCATTTAAGGACATTGCATGACAAATATGTACATCCCAGTTTATATGGGAGTAATGGCAACACGAATGCTTAA
Protein Sequence: MAIAASENYQLKWHSYGAHLHSSVATLLHSESFADVLLATSCGRHVAAHRFVLAACSSYLSHIFQTCHFGANTNAPIIVVLPTEIGYRTLKILIQYMYSGEATVTNDQLEGVLKAGDILRVRGLWRSNTGSKKENIQSNNQKMDREKREQPPLTGQIQKIKLVQPSAEKIVENTQQNTPIQNNIQPQKPMSERKSIEKIEEKTNEPESKKVLEENKNNEQNKNKENVENNGKKRKTTNSDVESNKSKSEDGENTELNLELLVKDEPIWEETIDPSESLTIDHEIDIKPEIVHSADEEEEYSPLTCDMCSQTFNRPSDWVRHIEFTHADMTENRRKKRKGDVDDDSKDFPPLKCDLCGNMYSTPQEWVRHIQTEHTEEQLALMNNSAPPKPKRVHSHQKLCNICQKEFPSHASMVIHQRTHTGEKPFLCSYCKKGFNVKSNLLRHLRTLHDKYVHPSLYGSNGNTNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00216509;
90% Identity: iTF_00962070;
80% Identity: iTF_00140700;