Acer009612.1
Basic Information
- Insect
- Apis cerana
- Gene Symbol
- -
- Assembly
- GCA_029169275.1
- Location
- CM054905.1:12217648-12220773[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.043 4.9 8.4 1.1 3 23 254 274 254 274 0.90 2 13 0.098 11 7.3 0.7 1 23 279 302 279 302 0.95 3 13 5.5e-05 0.0062 17.5 0.4 3 23 316 337 314 337 0.95 4 13 0.0057 0.65 11.2 0.4 3 23 350 370 350 370 0.98 5 13 2.8e-07 3.2e-05 24.7 1.6 2 23 412 433 411 433 0.97 6 13 0.0048 0.54 11.4 0.5 1 23 438 461 438 461 0.93 7 13 0.37 42 5.5 1.8 2 23 531 552 531 552 0.96 8 13 4e-05 0.0045 18.0 3.8 1 23 561 583 561 583 0.95 9 13 0.00036 0.04 15.0 1.7 1 23 592 614 592 614 0.98 10 13 0.038 4.3 8.6 4.1 1 21 620 640 620 641 0.95 11 13 0.00023 0.025 15.6 2.9 1 23 668 690 668 690 0.99 12 13 0.18 20 6.5 0.0 1 23 769 792 769 792 0.97 13 13 6.9e-07 7.8e-05 23.5 5.9 1 23 797 820 797 820 0.98
Sequence Information
- Coding Sequence
- atggcTGTGTCTAACAAGTGGGAGAATGCTTGTAGATTATGTtcagaagagaaaaatgaaatgttatcAATTTTTGGTAATGAAGGTGTACAACGTAAAGTAGCACAAAAATTACGTGCTTGTCTGCCAGTCTTAGTATACAAAACCGATCCACTGCCAAAGCAAATATGTCAGTTCTGTGCCGCAAGGTTGGATGATGTTTATGAATTTAGAGAATATTGTTTGAGTGTTTACAAAAGTatgtatttgaaattgttagcATATAAGGATATTGAATctgttcaaatttatttagaagcAATGAAAAATTCTCCTGATCCTTGTCagtCTCAATTATGGAGAGAAAAGGCTAGAGCACCACCACCTTTGGTACCTTTGCCAGTTTCACTGCCAATTGAAAGTCCATCAATGTCAATAGATATTAATCAAGAGCATCAAAATAGTTGCATGGAATCATTACCTGAATTACCATGTGAagtagaaattaaagaaatgacTACAGAATCAATATTAGAAACAGATATTAGTGCATATGAATCATcacataaaaattgtatagaaaatgagttatatgataaattaaatataatagtaaatcataatacaaatttattaaaaaatgaaaataatatctcaagacaaaaaataaaggaggaagaaaaaagaactagTATTTTAGAACAAGTACTGACAGGTAGTTTAACAATGAATGACAGAAAAGATTTAAACtcagaaacaaaattatcatcTAAATGGTGGTGTACTCCTTGCAATAGTTATTATAAaacaaAAGAAAGCTTAATGAAACATATGCAGTTACACTGtccaagaaaatataattgtagaaaatgTTCTGCTTGCTTTGAATTGGTAGAAGACTTAGCTAAACATGAAGCTACTAATCATTTGAAAGTAACGTTAGACTTTGATAGAAGTGTTATAGATTGTGATCAATGTGATAGACAATTTGTGAGTTGGGAAATGTTAAAGAAACACAGATTACGTGATCATTTAactcaaataaatgaaattgggACCAATACATGGTGCTCCTTATGCAATAgatttttcccAAGTACAGAAGCTTATCAAAGTCACATTCAATTGCATGAAGTCAGTAATTCAACAAAAACATTGCAATTAACGAATCAGcaatcaatgaaaattctcaaaaacgAGGAATCTTCAAAAGAAGTGAAAAGAGAGCATTTTACAGATACCACTAAATCACTTACATGTCCTACTTGtggaaaaATTTGTACTCAACAAAGTGCATTATCAAATCACATGCGTACTCACGAACCAAAAAGACACAAATGTGATATATGCGGTCGATCTTTTGGACTTTTTATACGTTTAGCAGCACATAGAATGAGTGAACATAGTCAAGAACCTACAGTGTCACTTGTAATGACCAGTGTTGAACAAGAAGAAGCATTAAATGCTGAAAGAGAAGCTAAAGAAGCAAAAGAAGCCAGAACTCGTGCAAAAACTAGAACATATTCAGAgatgGAAGATATTCCTAATCATGAAGATTTACCATCGAAAAGAAATGTTCCATTAAATACTAatgcatttaaaaatgttgCAAGATGTGGTATTTGTTTACAATGGTTCAGTGATCATACTACAATGTTAACGCATTTACGAACACATTCAGACAATTAtacttgtaaaaatttcacttgtcacatatgtaaaaaatctttcaaagaaAAGTGGCAATTATTTAGACATGAGgTATCTCATAAACGAAATGAATCAACATCAATGTACATATGCACAGTATGTAACAAATCATTTGtagacaaaaatatatacaaaacacATCAAAAATCTCACATTATTGATAAAACATATCATTGTTcaaaatgtaacaaaatatttttcaaagaagtaTCTCTATTAACACATCAATGTTCGGCAGAAACTGTGCTCAGTAAAAAAGGTGTTTCCTCAAAGACTTCACAAAAATCTATGTCAGTTAGTAacagcaaaaaatataaatgtaccAAATGCAATGCCTCTTTCAGTAGTTTTCAATCTAAAAACTCTCATATGAGAATACATATGGAAAGTTCATATACAATGGTGCGAAAACAAGACTTAAAGAAAGagtcaaaaaaagaagaaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagctatGCCAAAATTAATTCCTGAAACATCATTGGAATATTCCATATCTCCTATTGAaccgaaaatagaaataaatgaagaaagtGCACCACCTCCGATTAAACGAACCTTAATCAAGACAATGGGCGggTATCGATGCGGAGTATGTCAATCTCCATTTGTTTTACGAGAATTAGCTGTTGCACATTTAAGATCTGCACATCCTTTGATGCCATATCAATGTCCTTATTGTAAAAAACGATTTACTACCCAATATACATTCACGCATCATATTAAAACAGATCATCCTGACGAACACGAGAATTGA
- Protein Sequence
- MAVSNKWENACRLCSEEKNEMLSIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKSMYLKLLAYKDIESVQIYLEAMKNSPDPCQSQLWREKARAPPPLVPLPVSLPIESPSMSIDINQEHQNSCMESLPELPCEVEIKEMTTESILETDISAYESSHKNCIENELYDKLNIIVNHNTNLLKNENNISRQKIKEEEKRTSILEQVLTGSLTMNDRKDLNSETKLSSKWWCTPCNSYYKTKESLMKHMQLHCPRKYNCRKCSACFELVEDLAKHEATNHLKVTLDFDRSVIDCDQCDRQFVSWEMLKKHRLRDHLTQINEIGTNTWCSLCNRFFPSTEAYQSHIQLHEVSNSTKTLQLTNQQSMKILKNEESSKEVKREHFTDTTKSLTCPTCGKICTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQEPTVSLVMTSVEQEEALNAEREAKEAKEARTRAKTRTYSEMEDIPNHEDLPSKRNVPLNTNAFKNVARCGICLQWFSDHTTMLTHLRTHSDNYTCKNFTCHICKKSFKEKWQLFRHEVSHKRNESTSMYICTVCNKSFVDKNIYKTHQKSHIIDKTYHCSKCNKIFFKEVSLLTHQCSAETVLSKKGVSSKTSQKSMSVSNSKKYKCTKCNASFSSFQSKNSHMRIHMESSYTMVRKQDLKKESKKEEKEEEEEEEEEEEEEAMPKLIPETSLEYSISPIEPKIEINEESAPPPIKRTLIKTMGGYRCGVCQSPFVLRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKTDHPDEHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123225;
- 90% Identity
- iTF_00142623;
- 80% Identity
- -