Basic Information

Insect: Apis cerana
Gene Symbol: -
Assembly: GCA_029169275.1
Location: CM054905.1:11709602-11711925[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00019 0.021 15.9 3.7 1 23 292 314 292 314 0.97

2 12 9e-05 0.01 16.8 3.5 1 23 318 340 318 340 0.98

3 12 0.00053 0.06 14.4 3.1 3 23 347 367 345 367 0.96

4 12 0.0008 0.091 13.9 3.3 1 23 419 441 419 441 0.97

5 12 0.00083 0.094 13.8 1.4 1 23 446 468 446 468 0.97

6 12 0.0003 0.034 15.2 2.3 1 23 517 539 517 539 0.98

7 12 2.2e-05 0.0024 18.8 0.4 2 23 547 568 546 568 0.97

8 12 1e-06 0.00012 22.9 2.1 1 23 578 600 578 600 0.96

9 12 0.00024 0.027 15.5 1.6 1 23 606 628 606 628 0.97

10 12 0.00017 0.019 16.0 0.7 1 23 634 656 634 656 0.98

11 12 5e-06 0.00056 20.8 2.0 1 23 662 684 662 684 0.96

12 12 8.9e-05 0.01 16.9 0.3 1 22 690 711 690 711 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00019	0.021	15.9	3.7	1	23	292	314	292	314	0.97
2	12	9e-05	0.01	16.8	3.5	1	23	318	340	318	340	0.98
3	12	0.00053	0.06	14.4	3.1	3	23	347	367	345	367	0.96
4	12	0.0008	0.091	13.9	3.3	1	23	419	441	419	441	0.97
5	12	0.00083	0.094	13.8	1.4	1	23	446	468	446	468	0.97
6	12	0.0003	0.034	15.2	2.3	1	23	517	539	517	539	0.98
7	12	2.2e-05	0.0024	18.8	0.4	2	23	547	568	546	568	0.97
8	12	1e-06	0.00012	22.9	2.1	1	23	578	600	578	600	0.96
9	12	0.00024	0.027	15.5	1.6	1	23	606	628	606	628	0.97
10	12	0.00017	0.019	16.0	0.7	1	23	634	656	634	656	0.98
11	12	5e-06	0.00056	20.8	2.0	1	23	662	684	662	684	0.96
12	12	8.9e-05	0.01	16.9	0.3	1	22	690	711	690	711	0.96

Sequence Information

Coding Sequence: atgacaGAATACTTTGATTTACCACTTAATATGGACAGAATATGTAGAATTTGCCTTACAGAAGGTACTAATTTATCACCTATTTTTTGTACGGATCAAGAAGTGAATGATTTCTCGGCTCTTCCTCAAAAGATACAAGTTTGTGGATCAATAGAAATTCATGAACAAGATGGATTACCTTCATTAATTTgtgatatttgtatttataaagcaAGTGTTGCTCATGAATTTAGACAACAATGTCAACATTCTGATGCCAAATTACGAATGTATTACAATAAACCATCTAAAATTACTATTgtggatACATGTACACAAACTGAATCTGAGATAAGAACATTATTATCTAAAGAACAAATTAATCaagagaattattttgtaaaagagGAAATGCATGTAGCATCAAATTCTCAAGAATATGTACAAACTAATGATTCATATTGTAGAGAAGAATCTAACTTAAGCACCAGCCAAATTGATATGCAAAAtgagaaactttttatttgttctattGGATTTGAAGGAcctaaagaaattgaaaaagaatcttgtacctcagaaaataatatacatgaaaCATCTCTTACACAAGAAATCAACAATGATATTTCTGAAactataaatatgcaaaataaaccAGAAGAAAATCAAGATATCAATCAAAATTCAGAGGAAGATGATAGAAAACAAGAAGtagaattttttgatgaaaatatattaaatgataatgttaaagaagaagaagaagttgtGCAGAAACGTACTTCTACTAGGAAAGTAAAATCAGTGCCTAATAAAACTTATAGCGAAGATGAAAttcatgataattattatgactCAAGTAATGATGGTGAAGATTctggagaattaaaatttaaatgtaaagtaTGTGCAAAATGTTATAGCACACAAAGAGGCTTAAAGAAACATTCCCTTGTTCAtgaaaagaaacataaatgcaatatttgttcaaaaatgttttatagatTAGAGAATAtggaaaatcataaaaaaatacatgcaTCAAAACCACTTGCATGTCAATTATGTCATGCATGCTTTTCTAAACCTCAAAGTCTTGTACGTCATCTAAAATCTCATacagaaaaagtaaataatatgattaaacaaATTAGTACAGATGAACAAAAAGACAACAAGGAACCAAAAAAAGAGATGAAATTTGAAGATGATACAGATGATGAAAATAGTACTGTGAATGAAgtttatgattttgaaaatgcaCCTGAGTTGTACAAATGTGAAATTTGCAGTCAATATTgttcttcattaaaaaatctaaaaagacATAGTCTTGTACAtggagataaaaaatattcctgtACTGTATGTAAAAAATGGTTTTTTAGGCCTGATACATTAAAAAAGCATGCAGAAAAACATGGTCATggattattagataatttagcagatgataataaattttttgattctgaTGATGATTCTTTCCCAAGTACTACTCAAAATACTTtacaagaaaatgaaaatgttaaaaaagaagaaagtgatGAAGATGATTCTGGTGAATATAAATGTCAACATTGTGATAAAATTATGGCAACAAAGAAAGGTCTTAGACGTCATGTATCAATGCATAAACCAAAAGCTGAACCAGTTACTTGTGAAATCTGTGGAAAGGTATGTGCTAGTCAAGCTCGTCTTGTTCTTCATCAAAGGACACATAAACCAAAAGAAAAGGTTCCAAGAGAATACTTGTGTCACATTTGTAGTAAGGTGTATCCAAGTAATTCTTCTCTAACTTATCATATGAGAACTCATACTGGTATTAAACCACATGTGTGTAAAACTTGTAATAGTGGATTTACTACAACAACCAGTTTAGCAAATCATATTAGAATTCATACAGGTGATAAACCATTTGTTTGTCATGTATGCAGTGCTGCATTTGCTGTGAGTTCAGCTTTTAGACGACACTTGACTCGACATACTGGAGAAGCAAATTATTTGTGTAAAACATGTGGCAAAGCATTCAAAAGACTAAGTACTTTAAAAGAACATACTTATACTCATTCTGGTGAAAAACCATATGTGTGTAAAACTTGTGGAGCTGCTTATAGTCATAGTGGTAGTTTGTTTGCACATCAGAAACGTTGTCGAGCTCAATATGGAGAGATGGTTGTAGATGAACATCATCATACAGTTGCTCACCATATTCATGTAAATAATGTGCAATCTGCAGTACGATCACTTGCTGTGATAGgacaaatgttttaa
Protein Sequence: MTEYFDLPLNMDRICRICLTEGTNLSPIFCTDQEVNDFSALPQKIQVCGSIEIHEQDGLPSLICDICIYKASVAHEFRQQCQHSDAKLRMYYNKPSKITIVDTCTQTESEIRTLLSKEQINQENYFVKEEMHVASNSQEYVQTNDSYCREESNLSTSQIDMQNEKLFICSIGFEGPKEIEKESCTSENNIHETSLTQEINNDISETINMQNKPEENQDINQNSEEDDRKQEVEFFDENILNDNVKEEEEVVQKRTSTRKVKSVPNKTYSEDEIHDNYYDSSNDGEDSGELKFKCKVCAKCYSTQRGLKKHSLVHEKKHKCNICSKMFYRLENMENHKKIHASKPLACQLCHACFSKPQSLVRHLKSHTEKVNNMIKQISTDEQKDNKEPKKEMKFEDDTDDENSTVNEVYDFENAPELYKCEICSQYCSSLKNLKRHSLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKFFDSDDDSFPSTTQNTLQENENVKKEESDEDDSGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPVTCEICGKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVVDEHHHTVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00962662;
90% Identity: iTF_00223348;
80% Identity: -