Basic Information

Insect: Apis cerana
Gene Symbol: -
Assembly: GCA_029169275.1
Location: CM054903.1:554973-559493[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.6 1.8e+02 3.5 2.3 1 23 363 385 363 385 0.93

2 18 0.00085 0.096 13.8 0.9 2 23 420 441 419 441 0.98

3 18 5.3e-05 0.006 17.6 4.4 1 23 569 591 569 591 0.98

4 18 0.0015 0.17 13.0 0.8 2 23 595 616 594 616 0.96

5 18 7e-05 0.0079 17.2 1.6 1 23 687 709 687 709 0.97

6 18 0.00047 0.053 14.6 0.7 1 21 715 735 715 739 0.92

7 18 0.0035 0.39 11.9 3.4 2 23 815 836 814 836 0.95

8 18 0.00025 0.028 15.5 4.2 1 23 892 914 892 914 0.96

9 18 0.00031 0.035 15.1 0.7 1 20 919 938 919 940 0.94

10 18 0.059 6.7 8.0 0.3 2 23 951 972 951 972 0.97

11 18 3.2e-05 0.0036 18.3 0.6 2 23 1011 1032 1010 1032 0.97

12 18 2.9e-05 0.0033 18.4 1.6 1 23 1037 1059 1037 1059 0.95

13 18 0.00016 0.018 16.0 2.9 1 23 1065 1087 1065 1087 0.98

14 18 5.1e-06 0.00058 20.8 0.4 1 23 1103 1125 1103 1125 0.95

15 18 4.2e-07 4.7e-05 24.2 0.6 1 23 1131 1153 1131 1153 0.99

16 18 4.5e-05 0.0051 17.8 0.2 1 23 1159 1181 1159 1181 0.97

17 18 0.00017 0.019 16.0 4.1 1 23 1187 1209 1187 1209 0.96

18 18 0.012 1.3 10.2 0.4 1 20 1215 1234 1215 1236 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.6	1.8e+02	3.5	2.3	1	23	363	385	363	385	0.93
2	18	0.00085	0.096	13.8	0.9	2	23	420	441	419	441	0.98
3	18	5.3e-05	0.006	17.6	4.4	1	23	569	591	569	591	0.98
4	18	0.0015	0.17	13.0	0.8	2	23	595	616	594	616	0.96
5	18	7e-05	0.0079	17.2	1.6	1	23	687	709	687	709	0.97
6	18	0.00047	0.053	14.6	0.7	1	21	715	735	715	739	0.92
7	18	0.0035	0.39	11.9	3.4	2	23	815	836	814	836	0.95
8	18	0.00025	0.028	15.5	4.2	1	23	892	914	892	914	0.96
9	18	0.00031	0.035	15.1	0.7	1	20	919	938	919	940	0.94
10	18	0.059	6.7	8.0	0.3	2	23	951	972	951	972	0.97
11	18	3.2e-05	0.0036	18.3	0.6	2	23	1011	1032	1010	1032	0.97
12	18	2.9e-05	0.0033	18.4	1.6	1	23	1037	1059	1037	1059	0.95
13	18	0.00016	0.018	16.0	2.9	1	23	1065	1087	1065	1087	0.98
14	18	5.1e-06	0.00058	20.8	0.4	1	23	1103	1125	1103	1125	0.95
15	18	4.2e-07	4.7e-05	24.2	0.6	1	23	1131	1153	1131	1153	0.99
16	18	4.5e-05	0.0051	17.8	0.2	1	23	1159	1181	1159	1181	0.97
17	18	0.00017	0.019	16.0	4.1	1	23	1187	1209	1187	1209	0.96
18	18	0.012	1.3	10.2	0.4	1	20	1215	1234	1215	1236	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTGGAAATAAATACCTCCGATCCGTCACAAAACGAAGAGGGCACTGTGTCGACGGTGGAAATATGTCGCGTTTGTCTTCTTGGCAATGTGGTAATGCGAGACTTGTTTTTGGAAAGTGAGGTTGCATCCTTATCAGCAAAAGCAATGAGTTTTGCTAATGTTAAGATGTTACCCGGGGATGGTTTACCAACGCGTGTATGTTGGATGTGTGCGGATAGACTTGAATCTGCGTATGAGTTTAAATTACAGGTGGAACAAGCGGATACGGTTCtcagagaaaaatttgttactatgaatatgaaagaagagttattttttaatgaagttGAAGTACATTTAGAGGCAGgagaacaaaatgaaaatataggaGAAATGCATGTAGAAAATGATTATCAAAGCGCCAATACACTTACATCAATGTCTAGAGAAGAGAAATCATCGCTTTTGAAGAATCAATTAACTTTGTTACAgacagaaaaattaaacgaacaaGAAGAACAATCTATAGCAGAACAGAATTCTAGCACGGTTATAGAGGAAGTAATTGATCAAGCGATTACTACTGAACAGACAACAGAAGATTGCATGAATcatgaagaagaagatattaaaattatcacaaaCACTCCCaagaatgaagaaatattaaaacacgAAAATAGAGATAGTGATtgtcttgaaaatatttcaacagtggaacatgattatatattacaacagAAATGTATATTATCTAATGCGAATCAACAAGAACAACTACAACAACGTCATCATCAACTTACTAATTCTGAAGAATCATTTCAGCGTGAAGATTGTACAgaatatgtaaatttgttGGTAAAAGCAGCAGATGCAACAAAACAAGAAAGAGATGATGAAGGAGAAAAATCTATTACAAATACAGATATTAAAGCAGAAATAGATTCTCAGAACCAAAATGAAACTAGAAGAAGCAAACGTAAATTAGTCCGACGAAACATCGAAACAAAACGAGATTCtgatgaagaaaattattttgaaaatttgaatttaacttCAAGATTGAAAAAATCCTTAGATCAatcggaaaaaattttttttctgtgctACTTGTGTGACAAAGAGTTCTTATCAAagaatatattgaaagaaCATATGCATTCTCATGAAGAAGTTCGAAAAGCATTGTCTTTGAAAAAACTACCAGATACAccacaaaagaatatttacaatCTTGCAAAATCGCCTCCATCAGGTAAAAGATCGAACAAATGTCCCTATTGTggtaaacaatatatatatataatttcgttcagtaaacatttaaagaaacatgaaagagaaaaagaagagggaaaagatGAATCAATGCCTTTAGAAATATCATTCCATGAAGATGAACACAGTTTAGATTTTGATGATTATGAAGATACACGACGATATTCAGATattgaatatcgaaaaaaggccaaacaaaaaaaagaaaacattgctAGGGAAATAGGAAGGGAAGGAATAGAAGAAGAACAGAATCAAAATGTCTATagaaaagaagatgaaaggaataaaattaaaagtattagtAATAGTGACTGTggaaacaataacaataacaataacaaaaataatgatcACGATGACaatgatgacgatgatgacGATGACTATGACAATGATAATCAAATGATAGAGAATCGCAGTATtcgtataaaaacatttacatGTGATAAGTGCacagagaaattttatacgaaacgtAATTTACGAAAACATACAATGTCGCATACTGCTCTTAAGTGCAGTATATGTGAAGAAGAATTCGATTCGCTAGAAAAATTAAGGAATCATCGAACAAAACACGTTATTGAAGGTGTGTTAACTGAACAAGAACTCGAAATGGATacaaaaaattcgatcaataATGAagcaaataattatgaaacaatGGATAAAGAAAGTGAAGAAAAGAATTGCGGAATAGAAAATGAATCACTTTTgccagaaattgaaaataatacttcaaaaaaaaacgacAGAAGCATGGAGATTCATCATCATTCTGGAACCAACTATAATTGCAAGATGTGTTATCAACAATTTGCAACAAAGGATCTATTGCAGAAGCATATGGAACAACATGAACGTATAAAAACTTACAAATGTACACAATGTAATAAAACATTTGGTAATGAACTTACATTACGTAATCATCTTATAGCTACAAATCATAAAACTTTCCTTCATGGGCAAGAATATGATCCTAATAAACGTATTAAAAGAGTTGCTGCGAAAGCTgcacaaaaaattatagataaaattaaaactgaagATGGCTTAGAAGATtatgatgaagaagaaaataacgaTAGGATAAATCGTGCTTATTCTACAGATAATAACCGGAATAAGCGAGAAATTTTTTCGCAAAAGagacataattataaaaaagaattggaatGTGCaagttgtaataaaaaatgtaattcaaaGCAATCATTAACAAAACATATGGAGCAACATGTGAAAGATGAACAACAACGAggtataaaattggaaaaacaaAAGCAAtcaacagaaaaaaaagaacgacaaAAGGATTGTTCTAATGAAGAGATAGATCATAGTGAAAACAGAGATGATTACGATTCAGATTTTGAAAGTGGTTTAGATTGGCCAATGGATAATCATGAATGCGCAAAATGTAAAAAACGATATAGTACGAAAAAATCGTTGTTACGTCACCAATTGCTACATGAAGAACCAAATTTCGAATGCGATATTTGTAACGTCAAATTCTACCGTAAAGACAAATTAAAAGCTCATTATGATAAATGTTCTGAGAAAAATCCCGATCAAGtaagaaaatgtaatatcTGTGGAGATACTTTCGAAAACAACGAAATTTTGCGAGAACATAGAGCAAAACATGTTACGGAGGGTATTCTTACAGAGGAAGATTTAAGAGATATTGAACCGCGACCTGAAGAGAAAAAACCAGGtgaaaaaattggaaggaagagaagaaccGATATTGTAGGTTTAGAATGTACAGAATGTAACAAACAATATACATCAAGGAAAGGGCTTTTACGACATATTCAAGTTCATGAAGGAAAAAAGTACTTATGTGATATATgtccaaaaaaattttatagaagggaacatttaaaaatacatgtaGCGAaacataatatgattaaacCATATAAATGTACACGTTGTACAAAGCGTTTCATTAAAGAAGAACAATTAACAAATCATTTATCAAAGCATGAtcgaacatttaaaaaaaacaaagaaactgATAGCTCAAAAAGATTTCTTTGCGAGATTTGTTCCAAAAGTTTCACACAATCGACAACGTTAATTGCACATCTTAGAGCCCATAATGGCATAAAACCATATGTTTGCGAGGTTTGTTCACGACCATTTACAACGAACGCctatttaaaaatgcatatGAGGACACATACTCAGGAACGACCATATATTTGTCAATATTGTTCACGAGCATTTGCTAGAGCTGATACTCTTGCTAATCATTTAACTTCACATACAGGCGAAGCTAAATATCATTGTAAATACTGTCCAAAGAATTTTCGTCGTCTTAAATCGCTCAAAGAACACGTTTTTATTCATACTGGTCAAAGACCTTATGCCTGTCCTACCTGTGACCGACGATTCAATAACAATGGAAGTCGTTACGCTCATAGTAAAAgatgtaaacaaaattttgtccAAAATCAGAATCGTACTCAAACATTAATTACACAAGTACAACCAGCTCAAAATCAACAAAGAGTGCTACAACAGACTACACTTGGACAAGGACAAATAGTAAAGgctcaaaatattaaaacaattactaTTACTAGGCAACCTGAACCAGTCACTGCTCAACAAACAGTTATGCAACATCAGGAGATATTAATGCCTTTAATTCTCCCTCTTACAGTCACTCTTACTGATGTTGGTGAAGAAGTAATTTTACCAGAAGGAACCAAAATATTTACtacatcataa
Protein Sequence: MDAVEINTSDPSQNEEGTVSTVEICRVCLLGNVVMRDLFLESEVASLSAKAMSFANVKMLPGDGLPTRVCWMCADRLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVHLEAGEQNENIGEMHVENDYQSANTLTSMSREEKSSLLKNQLTLLQTEKLNEQEEQSIAEQNSSTVIEEVIDQAITTEQTTEDCMNHEEEDIKIITNTPKNEEILKHENRDSDCLENISTVEHDYILQQKCILSNANQQEQLQQRHHQLTNSEESFQREDCTEYVNLLVKAADATKQERDDEGEKSITNTDIKAEIDSQNQNETRRSKRKLVRRNIETKRDSDEENYFENLNLTSRLKKSLDQSEKIFFLCYLCDKEFLSKNILKEHMHSHEEVRKALSLKKLPDTPQKNIYNLAKSPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEREKEEGKDESMPLEISFHEDEHSLDFDDYEDTRRYSDIEYRKKAKQKKENIAREIGREGIEEEQNQNVYRKEDERNKIKSISNSDCGNNNNNNNKNNDHDDNDDDDDDDYDNDNQMIENRSIRIKTFTCDKCTEKFYTKRNLRKHTMSHTALKCSICEEEFDSLEKLRNHRTKHVIEGVLTEQELEMDTKNSINNEANNYETMDKESEEKNCGIENESLLPEIENNTSKKNDRSMEIHHHSGTNYNCKMCYQQFATKDLLQKHMEQHERIKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDEEENNDRINRAYSTDNNRNKREIFSQKRHNYKKELECASCNKKCNSKQSLTKHMEQHVKDEQQRGIKLEKQKQSTEKKERQKDCSNEEIDHSENRDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRAKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRTQTLITQVQPAQNQQRVLQQTTLGQGQIVKAQNIKTITITRQPEPVTAQQTVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141347;
90% Identity: iTF_00141963;
80% Identity: -