Acer015160.1
Basic Information
- Insect
- Apis cerana
- Gene Symbol
- -
- Assembly
- GCA_029169275.1
- Location
- CM054909.1:10459035-10460727[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-11 2.4e-07 30.9 0.1 8 38 37 66 32 70 0.92 2 2 2.3 6.3e+03 -2.4 0.0 30 38 94 102 94 107 0.83
Sequence Information
- Coding Sequence
- ATGATTGCCCATTCCTCGAACAATATTCAGTTCTTTCTCGAAGGACGACGGCATTACAATGGCGGGAGACCAAGGCCTAGGGAGCTCGAATTCGAACACGTGAAGTCGGCCATCGAGGCGGTGGCCAACGGGTTGTCGCTGAGGAAGGCGGCTAATATGTTCTGCATATCGAAATCTGTTCTTCATCGTTACAGTAAACTGGAGTCACGATCGGTGGGATACCTCAACTGCCAGAAAGTCACCTATCCGTGCAAGAATTGCGGCAAAGTGTACAATTACTACTCCAGTTTGGCGAGGCATTTGAAGCACGAATGCGGGGTGGAACCGAAGTTTCACTGTCCACTCTGCCCTTACAGAACGAAGCACAAATCCAGCTTGAACACACATCTGAACGGCAGGCATATGAAACTTTTGAGCGAATTTTACACTATGCCAAATGGGAACAAGCTTTCATCCACCATGGATACTGGGAATTAA
- Protein Sequence
- MIAHSSNNIQFFLEGRRHYNGGRPRPRELEFEHVKSAIEAVANGLSLRKAANMFCISKSVLHRYSKLESRSVGYLNCQKVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYTMPNGNKLSSTMDTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142117;
- 90% Identity
- iTF_00142117;
- 80% Identity
- iTF_00140893;