Acer003304.1
Basic Information
- Insect
- Apis cerana
- Gene Symbol
- lov
- Assembly
- GCA_029169275.1
- Location
- CM054902.1:2521344-2532668[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-18 3.7e-15 56.0 0.0 1 44 421 464 421 465 0.96
Sequence Information
- Coding Sequence
- ATGTCGAGCGCCGCGGACAGTCCTGATGGGATGGCTTTGCAGTCGCACTATTCCTTACGATGGAACAATCATCAGACGCATATACTCCAAGCCTTCGAGGCGTTGCTACACGCGGAATTACTCGTTGACGTGACCCTGGTCTGCGCCGAGACTAGTCTCAGGGCGCACAAGGTTGTTCTTAGTGCCTGCAGCCCGTTCTTCGAGAGGATATTTGCGGAGCACCCCTGCAAACATCCGGTGATCGTGCTAAAGGACTTCCCCGGCCACGAGGTGGCGGCGCTGATCGACTTTATGTACCGTGGCGAAGTGAGGGTCGGCCGTGAGGAGCTTCCCGGCCTGATGAGAGCCGCGGAGAGTCTGCAGGTGCGTGGATTAGTGTTGTCGGAACCGAGACCTACATCACCACCGGAAACACCGACCGCGGACCTCCTCCTGGGCGAGCCCTCGACACCCGAAGGGGCCAGACAAGGTACGCCCGAGGAGGATGACAACGCGTCCGAGAGTACCGCGCCCCCGTCCACCCGGGAACAACCACCCCCCGTCACGACACCCACCATTTTCCACCCCACGAGGGACCACCGTGATATGTTGCCGCACATGGGCCACTTGAACTTTGGGATGCGCGAGTTGCGTGAAAGTTGCGGATCCCCGCTTTTGCCACGGCGAAAGCAAGCACGGCCGCGGAGGAGATCGGTCGAGCTCGTTCCTCAAGATCTGAGCAGACCCCATCCACCGCCGAGCCTTAGCCCGCCTGCAAGCGGACTGGATCTGACCGGGTCTAACAACAATCATCAACAATCgcagcaacagcaacagcagcaacaacaacagtcTCAGGGTCATCGTCCGCAGCGGGAGGGAAGCCCGCCCAGGACAACACATCCGTAtcagcaacaacagcaacagcaacaacaacagcaacaacaagaATCTCCACTCACACCGCAACAAAGCTCCGTAACGCCGATATTCCCATTGGATGGTGTCGTGTCTCTAGGTGGTGGACTGTTCCCTCATGTAGGTGCTCTAGACAGGGGATCCCTTTTGGCGGATCTCCACGATAGTTTTAAACCGGAAGCGCTGCACGGACTTTTCGGCGCGGCCAGTCTCGGGACTCATCACCCGGGTAAAAAGCCAAAGAAGCACAGGGGCGACGGTGATACGCCGCACAGGTGGGGTGACCATAGCAGCAGGGGCCTCCCCGTCGGGAGGCCGAAAGGACAGCATAGCGCGCCTAGAGGCGGTCCACCCAGGTCTTGGACGAACGCGGAGTTGACCGAGGCGTTGCAGCACGTTTGGAACAAGAAGATGACCACGTCGCAGGCAAGCAGAATATTCGGCATCCCGTACAACAGCTTGTTAATGTACGTGCGGGGGAAATATGGGAAGAGTTTGAAACTCGAACAGCTGAGAAGGGACTGCACGGGGGCGACTACGGGCGAGGTGGTTATGAATTCGCTTAACAACAACGACAAGGCCGTCCAGCCGCCCGCGCAAATCATCCACCCTCTTGCTGGCCTGCCACCTCATCCAGGCGACGACGCTGGATTCCCTCATCACTCGTTGCTCGCGGGCAACCTGCCGCACGGTTTCTTCCCCGATTTTGCCCCCGCGGAAGCGTTGAACGATCGTTACTCGTTTGACAATCATATTCGATAA
- Protein Sequence
- MSSAADSPDGMALQSHYSLRWNNHQTHILQAFEALLHAELLVDVTLVCAETSLRAHKVVLSACSPFFERIFAEHPCKHPVIVLKDFPGHEVAALIDFMYRGEVRVGREELPGLMRAAESLQVRGLVLSEPRPTSPPETPTADLLLGEPSTPEGARQGTPEEDDNASESTAPPSTREQPPPVTTPTIFHPTRDHRDMLPHMGHLNFGMRELRESCGSPLLPRRKQARPRRRSVELVPQDLSRPHPPPSLSPPASGLDLTGSNNNHQQSQQQQQQQQQQSQGHRPQREGSPPRTTHPYQQQQQQQQQQQQQESPLTPQQSSVTPIFPLDGVVSLGGGLFPHVGALDRGSLLADLHDSFKPEALHGLFGAASLGTHHPGKKPKKHRGDGDTPHRWGDHSSRGLPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGATTGEVVMNSLNNNDKAVQPPAQIIHPLAGLPPHPGDDAGFPHHSLLAGNLPHGFFPDFAPAEALNDRYSFDNHIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141750;
- 90% Identity
- iTF_00140688; iTF_00141750; iTF_00141924; iTF_00142556; iTF_00142396;
- 80% Identity
- iTF_00140688;