Aaln058987.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- stc
- Assembly
- GCA_963513935.1
- Location
- OY740772.1:71033019-71080901[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.39 1.9e+04 -1.9 2.2 5 10 18 23 18 23 0.93 2 10 0.00053 25 7.3 7.4 1 11 29 39 29 40 0.96 3 10 0.33 1.6e+04 -1.6 0.6 4 10 44 50 43 51 0.64 4 10 5.2e-10 2.5e-05 26.5 16.5 1 18 56 73 56 74 0.97 5 10 2 9.5e+04 -7.8 7.7 15 19 104 108 101 108 0.78 6 10 2 9.5e+04 -10.4 15.3 10 19 121 131 109 131 0.68 7 10 0.99 4.7e+04 -3.1 0.3 9 11 149 151 148 152 0.79 8 10 2 9.5e+04 -4.4 0.9 15 18 157 161 156 161 0.50 9 10 2.9e-05 1.4 11.4 15.4 1 16 167 182 167 192 0.87 10 10 1.1e-06 0.054 15.9 11.9 1 18 199 217 199 218 0.93
Sequence Information
- Coding Sequence
- ATGGATCGTGAAATACCATGTGTGGAACTGACTACCAAAGCCGATGATGCACGTTGTCAGAAGAAATGTACCaagAAACGCATGTGTGGGAAACATAAATGCAACCAGTTTTGTTGTATAGATGTAGACCATGTTTGTCCATTTCCTTGCAATCATATATTGACATGCGGACAACATCGTTGTGAACAGTTGTGTCATCGTGGACATTGCCAGCCATGTTTGCGTTCTAGTTTTGAAGAATTATATTGTGAATGTGGTCGCAGTGTACTATTCCCACCAATACCTTGTGGTACTCGTCCTCCACCTTGTTGTAGCCCATGTTCTCGTCAGCATTCTTGTAATCACCCTGTTCTACACAACTGCCATAGTTTACCTGAATGTCCGCCATGCTCAGTTCTAACTGCCAAATATTGCCATGGGAAACATGAGTTGAGGAAAACAGTACCTTGTCATTTAGAAGAGTTTTCTTGTGGTTTACCGTGCGGCAAAGCATTGAACTGTGGAAGACATAATTGTATTTTACCTTGTCATGGAGGAGAATGCCTCAAACCTGGTCAGACATGCAAACAACCTTGTACTATTCCTAGAGATCTGTGTGGACATGCTTGTAACAATCCATGTCATGATGGAGATTGTGTGGATACTCCTTGCAAGGAAACTGTCATTGTTACTTGTATATGTGGCAATCAGAGCACTTCTAGGCCTTGTTATGAAAACAACAGTGAATATCATCGTATTGCTACAGCACTGTTAGCTTCCAAGATGGCAGATGTTCAATTAGGGCGATCTGTACATCTTGGTGATATGCAAGGAGCtagaaaaatgagtttaaaaacGTTAGATTGTAATGAAGAATGCCGTTTACTTGAACGTAACCGTCGCCTTGCCATTGGTCTACAAATAAGAAATCCAGACCTCAGTTCTAAATTGACTCCACGTTATTCAGATTTTATGCGTGGTTGGGCGAAGAAAGATGCACGGTTTTGTCAAAATGTACATGACAAATTAACAGAGCTGGTGCAACTAGCAAAACagtCCAAACAAAAAAGCCGCAGTTATTCATTTGAGACGATGAACCGAGAGAAGCGTCAGTTTGTTCATGAATGTTGTGAACACTTTGGTTGCGAGTCTGTGGCTTATGATGCTGAACCTAAACGAAATGTAGTAGCTACAGCACAAAAGGATAGAGTATGa
- Protein Sequence
- MDREIPCVELTTKADDARCQKKCTKKRMCGKHKCNQFCCIDVDHVCPFPCNHILTCGQHRCEQLCHRGHCQPCLRSSFEELYCECGRSVLFPPIPCGTRPPPCCSPCSRQHSCNHPVLHNCHSLPECPPCSVLTAKYCHGKHELRKTVPCHLEEFSCGLPCGKALNCGRHNCILPCHGGECLKPGQTCKQPCTIPRDLCGHACNNPCHDGDCVDTPCKETVIVTCICGNQSTSRPCYENNSEYHRIATALLASKMADVQLGRSVHLGDMQGARKMSLKTLDCNEECRLLERNRRLAIGLQIRNPDLSSKLTPRYSDFMRGWAKKDARFCQNVHDKLTELVQLAKQSKQKSRSYSFETMNREKRQFVHECCEHFGCESVAYDAEPKRNVVATAQKDRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -