Aaln008538.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740765.1:86432965-86436894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.026 8.8 9.3 5.0 3 23 251 272 250 272 0.92 2 11 0.0031 1 12.2 3.8 3 23 340 361 339 361 0.95 3 11 0.046 15 8.5 0.7 3 23 572 593 570 593 0.91 4 11 0.13 43 7.1 0.6 3 23 674 694 672 695 0.94 5 11 0.0047 1.6 11.6 2.2 2 23 726 748 725 748 0.92 6 11 0.05 17 8.4 4.5 3 23 798 819 797 819 0.97 7 11 0.015 5.1 10.1 1.9 2 23 833 855 832 855 0.94 8 11 0.013 4.4 10.2 0.4 2 23 903 925 903 925 0.94 9 11 0.068 23 8.0 1.0 1 23 1029 1051 1029 1051 0.98 10 11 0.011 3.7 10.5 0.2 2 23 1067 1088 1066 1088 0.93 11 11 3.9 1.3e+03 2.4 0.8 1 12 1190 1201 1190 1213 0.74
Sequence Information
- Coding Sequence
- ATGGCGTCAGCGTTAGTGCATATGACATCAGCAAGTCATTGTATGCAGTTAGCTGACAATTTAATGATGCTTGATATGGAAACAGGCTTTGAACCTTACTCTGAAGAGGGAGGTGGGATAGATATAGGTAACAAAAGACCATTTCCTGAACTAGATGAAGATCATGATAAAAGTTATTTGAAGAAACGAAGAAAACAGTCTAAGCCTGTAAAAATAGCATCATCAGATTCTTTGTCTGATGGtgaaatttcaaatagaaacaatcaaaatattagtgATGTTGGTAGATTTGAATCAGGTAATACATTTTTAACCTTAAAACCATTGGAAGAAAAAATTGATGTAGTAGCTTTTAATCAAGGGAAtgacaacaataatataaataaaaaaacggaGGAACAATTAGATACATTTTGTGGTACACAAAAATATACACATGGTGATACAAATTTTCCTCTTAATCTTTCTAATATAAAACCTTCTACATCCTTTGCAGATAGTCTTTTACTGTTACAAATGAATGAAAGTAACCGAAAAACAAGTTCTATACAATTACAAGGGGATACAGTATCACCTTGTCAAGGTACAATTAATGATGACACAATATCTAAGAAAATAACTTCACATGAAAACTCATAtctatcttcttcttcttctccacTGTTATACCCTTACAGGAAGCAAATTCAACTGCCAAATGTAACATCACAGATGAATTCCCCTTTACGAATTTTTAATCCAGAAGCTTTTTGTGACCTATGTAATAAAgagttttgtaacaaatatttcttaaagaCTCATAAAGCTAACAAACATGGCATTTATATGGACAACATTAGTGGACCTCCAATACTTGATTCCTTTCCATCATTACCTTTTATGAGTTATTTTTCAACTGCCAATGAAATTTTATGTCAGAACACATGTACTGTTTCTCGGTCTGCTACCAAGAAGATTCAGAATCCACAGCCTAGTAATTTGTTTTCCTTAAAGAGTAATGGAAACATAAGAGCATTTTGTGATATTTGTCAAAGAGAATTTTGCAACAAATATTTTCTTCGAAGGCATAAGGCAAAAATACATGGGATAATTGATTCTTCTTTGAAAGATGGAACAAGCTCTGATGGTCAAGACTTCAAGGCTCACTGCAGTGGTAACATCAATAGCTTACAAGATAAGTTTGAACCAACCGCCAATGATTCAGATGTATATAATATCCCTCCTGTGTTTACTAGTTCTGGGAAAGAAACTGTACCTACTGAGTATGTTTCATGTAAAGTTTCAATAAACCAAGAAAAAGAAATAGATAGTAGAAGCGATGGAAGTCCTGATCCACTTACAGGACAACTTGTGTCCTCATCATTTCcgtctatatttcaaaatatacaaaatcaaaatggAGAACAAACCAAAGATTCTAGCCTTTCTCCTGGCAGAATTAAAAAACTTGGAATTGTAAACACTGATGCATTTTGTGATATTTGTTGTAAAGAATattgcaacaaatattttttaaggacTCATAAACAGAAATGTCACGGTATAATAACACCAGAGATAGACAGGAAAGACGATAGAAGCAATAGTAATAGCAATCAAATGTGGTACACTAATCAAAGTCAAACCACACCACTGAATCTCATAATTACAGATCAAGGAGAGTCTAATTTTGGAATTGCTGAAAAAACTCAATTCAAATCAGAAGAAACAATATGTCTCATATGTCAACGTAGTTtcccaaatatttttttgttaaaaatgcaCTATGCACATATGCATTCAGGAGAAGAAACAGCAAAAGATCTCTCATCAAGCAGTCGGATACTTCCCAAAGATGAACAAAGTTGTGACAAGCCCCTTAATATCAGTGATTTAGAAAACATGAATGTTGAAAATAAAGCAGAATCAGTTGAAACTACTGAAATCAActctaacaaaaacattaattttgaatgtGCACAAAAACTGCATTCAATGATTTTAAGGCTGCACAGTTCTAATGCTGGAGATAATTCAATATGTGATGTATGTAATATAGATGTCGGGCATGTGTCTTTGCTAGAACGCCATGTAATGAAACACCATTCTTGTCTTTTAGAAGAACTAGGTAATATTGAAGATGATGAAAATTCAAATTCTCAAGGTATTTTACTTAGTACATACTCTGAAAAAATTTCTTGCCTTCattgtcataaaatattttcaaattcaaatttattagatGAGCATATCAGTGAATTTCATAATGATGAAGAACCAATACTGAATTCAACACCATCTCCGATGTCAAAGACGTGTAACTTAAACAGTGACGGCTTAAAGAGCCCTTCAGTTTCATCAGTAATATCTCAACAAGACAGACAGAATCTTCAAACTCCAACCAACAGTTTTTGCGACATTTGTAAAAAAgaattatgtaacaaatattttatgaaaactcATATGCAACGAATGCATGGCATTTCTATAGAAAATGGGGCCCATATCGGTGGTGTAGTTTGTGACATCTGTAACAAGGAGTTGTGTAGCAAATATTTCCTTCGGGTTCACAAACAAAATTCTCATGGAATAGTGGATGAGGTATTTTTGGCACAGTTAGGACTTGATGGAACTCACAATCAATTACAGTCACCTACTTCGGATCCTGCATTGAAGCCATCAGATCCTGCTGACCTAAACCATCGATATTTTACTCATTTTACAGAAGTATGTATGATATGCAGCAGGAGATTCCGAGGTACTAAATGGCTAAAAGCGCATCTTCTCAATGATCATGGTGAAGAAGGGAGAGAAAAGTGGAAAGAATTTCAAaacatattagaaataaaaacacagcATTATGAGCGTTCAATGAAAGAGACTTTACAAAGACCAGACCCAAATCTTGAGGTTTCAATTAACACACCAGTGCAATTTAAACTCAATGCAACATCTAACAGTCCTGTTAATACTTTGTATAACACAAATGAAATAGTTTCAGAGAGACCTGAATCAATATCTAGAATAACCCAAATGGATACTAATTTAGCAAATACCTCCATGTTTTCTATGCTAATTAATGGCAATGattctagtttaaaaaattatcaatgttCATACTGTTCCTTTTCAACATCAATTCTTGCATTTCTCTTTGTGCATGAAAGGTCTCATATGGCAACATCAACAGCTTTCTCCCCTGAAGGAGATCATATATGGCAATGTTCAATTTGCCTAAAGATTTTTGAGTCTAAGGATGTTCTAGAAAAACACAGTGTATCACATAAAGCAACTGGTCTTATAGAATATTTAGGAGAAGCATTAGCTACTAATGAAGACACAAATGTACAGAGTAAAAGTTCCTTAAAAAAtgattatacaaaaatacaagaGGAAAGAACGGAAGAAGGTGAAATTTTTAATGAGTTACCAAAtaagaaagatattttaaatttatctgatAAAAGTACTTCAATTATAAGAAAGTTTTCATTTGAAGCCAAGCAATCTACACATGGTTACAAACAACAATATGATACCCCCAAAGTTATATCCTATAACACTAAGAAGAAGCCTGAAGAAGTTTGGCACAAGTGTAAGAAATGTGGATTTGTAACAGACGACATACTCATTTTTAACAACCACATAGAACAATATCACAACAATAAAAAAGTTGATGAAGATTTGTTGGAGGCATTAGAACAGATCAAGGATACATTATCTCATATAGCTAGGAAAGCTGAAGTTCCTGCATTATTTGCTGTTCCTCAATCTCAAGATCCATTCACAATGCAAGCTTTCATTTTAGAAGGATCAGAAGAAATCAACAATGTGGACAATGCTTTTAACAAAAGATTCGGTAAATCTATCTTATCTTCAATTGTCTTTTTGCCtgtcaaagaaaaatttaagtaTCCAGTGACAGCATCTTTTAAACTAACACCGACATGA
- Protein Sequence
- MASALVHMTSASHCMQLADNLMMLDMETGFEPYSEEGGGIDIGNKRPFPELDEDHDKSYLKKRRKQSKPVKIASSDSLSDGEISNRNNQNISDVGRFESGNTFLTLKPLEEKIDVVAFNQGNDNNNINKKTEEQLDTFCGTQKYTHGDTNFPLNLSNIKPSTSFADSLLLLQMNESNRKTSSIQLQGDTVSPCQGTINDDTISKKITSHENSYLSSSSSPLLYPYRKQIQLPNVTSQMNSPLRIFNPEAFCDLCNKEFCNKYFLKTHKANKHGIYMDNISGPPILDSFPSLPFMSYFSTANEILCQNTCTVSRSATKKIQNPQPSNLFSLKSNGNIRAFCDICQREFCNKYFLRRHKAKIHGIIDSSLKDGTSSDGQDFKAHCSGNINSLQDKFEPTANDSDVYNIPPVFTSSGKETVPTEYVSCKVSINQEKEIDSRSDGSPDPLTGQLVSSSFPSIFQNIQNQNGEQTKDSSLSPGRIKKLGIVNTDAFCDICCKEYCNKYFLRTHKQKCHGIITPEIDRKDDRSNSNSNQMWYTNQSQTTPLNLIITDQGESNFGIAEKTQFKSEETICLICQRSFPNIFLLKMHYAHMHSGEETAKDLSSSSRILPKDEQSCDKPLNISDLENMNVENKAESVETTEINSNKNINFECAQKLHSMILRLHSSNAGDNSICDVCNIDVGHVSLLERHVMKHHSCLLEELGNIEDDENSNSQGILLSTYSEKISCLHCHKIFSNSNLLDEHISEFHNDEEPILNSTPSPMSKTCNLNSDGLKSPSVSSVISQQDRQNLQTPTNSFCDICKKELCNKYFMKTHMQRMHGISIENGAHIGGVVCDICNKELCSKYFLRVHKQNSHGIVDEVFLAQLGLDGTHNQLQSPTSDPALKPSDPADLNHRYFTHFTEVCMICSRRFRGTKWLKAHLLNDHGEEGREKWKEFQNILEIKTQHYERSMKETLQRPDPNLEVSINTPVQFKLNATSNSPVNTLYNTNEIVSERPESISRITQMDTNLANTSMFSMLINGNDSSLKNYQCSYCSFSTSILAFLFVHERSHMATSTAFSPEGDHIWQCSICLKIFESKDVLEKHSVSHKATGLIEYLGEALATNEDTNVQSKSSLKNDYTKIQEERTEEGEIFNELPNKKDILNLSDKSTSIIRKFSFEAKQSTHGYKQQYDTPKVISYNTKKKPEEVWHKCKKCGFVTDDILIFNNHIEQYHNNKKVDEDLLEALEQIKDTLSHIARKAEVPALFAVPQSQDPFTMQAFILEGSEEINNVDNAFNKRFGKSILSSIVFLPVKEKFKYPVTASFKLTPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -