Aaln018194.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphrophora alni
Gene Symbol
Clamp
Assembly
GCA_963513935.1
Location
OY740766.1:63736663-63751321[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 1.4e-05 0.0046 19.6 2.2 1 23 265 287 265 287 0.99
2 7 2.5e-05 0.0084 18.8 1.4 1 23 412 434 412 434 0.98
3 7 1.8e-07 6e-05 25.6 0.2 1 23 440 462 440 462 0.99
4 7 1.8e-06 0.0006 22.4 1.7 1 23 468 490 468 490 0.98
5 7 5.6e-07 0.00019 24.0 1.9 1 23 496 518 496 518 0.99
6 7 2.3e-05 0.0079 18.9 0.6 1 23 524 546 524 546 0.98
7 7 9.4e-05 0.032 17.0 1.1 1 23 552 574 552 574 0.97

Sequence Information

Coding Sequence
ATGGCATTGGATTCTAATTCTTGGATTAATCGAGAACAGCACAAATCAAATAACGAACCACAACAGCAACAGATATTTGTTACTGAAAACCACCACCAACAACAACAGCAACAGCAGCAGCAGcaacaacagcaacaacaacGAGGCCTTCTCAAGATCCCAACAAAGTCTTCAATTCTTACACAAACTGAGAGTCAAGGATTCCACTCTGGCCCCATGATATTGGCCAAAGCTGTGGATATGAAAAGAAAGCTTAATGGTGATGAGACTTTTAAAGCTAGCACGGGATGCCTcggtaaatttaaatttcaacatagCATTCGACAGTTGGACATAACAGGCGAAGAATTAAGTGCAGATAGTGCAGTCATGCCTGAATACAAAGAACAACATGTGGAACAAATAGCTcaacaaaagttatttaaaggCCAAGTgTTCACACAAACAGAATATCGTGGCAGTTGTGTTGAAGGATCAACTCCTAACAAAGAAGTTGTCATGTTTGATCCTGCCATGCAACAACAACCTCAACCTAATCAAATGTATGCCGTAGTTGAGAAGAAAGACTCAGCAGATAAAACTTCAACAGTGGCAGAGTTTCCATTTTGTTATAATGTGAACATGTTACAAAAAGTACACCAACAACAAACTACAGGTGTTCCTACAGGTACTGTTGGTGGAATTAGTGGAGATGATAAGGGTTGTTACAGGTTTGATGTAGCTCAACCGTTTGGTTATAATTATGCTTTAGTAAATCAAATGTCTCTTGCAGCAGCTGCTTCAACAGCTACTTTTAAATGTGATGTGTGTGGACTTGTTTTTGGTCATTTATCGTTACTTAATCATCATAAACGTATTCATACTAGCAATAATAATCCAGTAACAGCTGATAGGAATTTTCCTTGTGAGCAAACTACTGAGACAAaacctcaaattaaaaataaaacaaaatgttgtaaTACGTGTGGAATTGAAGTGGATTGTGAGCATTCAAGTGGAAATAAAAAGAAGGCTAAATTTGTCAAATGTGAAAATTGTCAGACAACTCCATCTCCTTCAACAAATGGAGGGTTCCAGTCACCTCCACAAGAACCTAGTCCACCACAGGAGGTGCTTAATAAGAGTTTACATTTGGTTAAACGGCGTGGCATGGCTACAGTAACTAAATGTCACAAATGtaatggttcaggaataatattTGTTGGTGGTACAAGACCCACAGGGGACAAACCATTTCGGTGTAACCTTTGTGATGGTTCATTTTCACGATATTCATCTTTATGGAGCCACAAACGTTTACATACTGGAGATAAACCTTTTAAATGTGAAATGTGTGGCCTCACATTTGCTAGAGCAGCTTACCTAAAAAATCATATCAGAGTACATAGTGGAGAGAAACCTTTTAAATGTAATGTGTGTGGTATGCAGTTTTCACAATCGCCTCATCTAAAAAACCATGAAAGGATCCATAGTGGTGAAAGACCTTATCAGTGTGAAGTTTGTGAAAAAACATTCGCTCGTCACTCGACACTATGGAACCACAGACGAAtacatactggagaaaaaccttacAGATGTGGAGTCTGTGGTTCTGCTTTTAATCAAGCAACACATTTAAAGAACCATGCCAAGGTTCATACGGGTGAAAAACCCCACCGTTGTGATATTTGTGAAGTAGGATTTTCTGATAGGTTTGCTTTAAAAAGACACCGTAGTATTCATGAAAAATATGGACGTACTGCAGCTAATGGTCAACAACAACAGCACCAGCAGCAACAACAACAGCCCCAACAGCagcagcaacaacaacaacaacagcagcAGCAGCCACAGCAGCAGCAGCAGCCACAGCAGCAGCAACCACAACAACAGCCACAGCCAATAGATGAGTTATATAAGTGTGAAGTAGGTGGTCCAATAGCGTTTCCAGGTTGTTCCCGTCCACAAGATCAGAAACAGTAA
Protein Sequence
MALDSNSWINREQHKSNNEPQQQQIFVTENHHQQQQQQQQQQQQQQQRGLLKIPTKSSILTQTESQGFHSGPMILAKAVDMKRKLNGDETFKASTGCLGKFKFQHSIRQLDITGEELSADSAVMPEYKEQHVEQIAQQKLFKGQVFTQTEYRGSCVEGSTPNKEVVMFDPAMQQQPQPNQMYAVVEKKDSADKTSTVAEFPFCYNVNMLQKVHQQQTTGVPTGTVGGISGDDKGCYRFDVAQPFGYNYALVNQMSLAAAASTATFKCDVCGLVFGHLSLLNHHKRIHTSNNNPVTADRNFPCEQTTETKPQIKNKTKCCNTCGIEVDCEHSSGNKKKAKFVKCENCQTTPSPSTNGGFQSPPQEPSPPQEVLNKSLHLVKRRGMATVTKCHKCNGSGIIFVGGTRPTGDKPFRCNLCDGSFSRYSSLWSHKRLHTGDKPFKCEMCGLTFARAAYLKNHIRVHSGEKPFKCNVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCGVCGSAFNQATHLKNHAKVHTGEKPHRCDICEVGFSDRFALKRHRSIHEKYGRTAANGQQQQHQQQQQQPQQQQQQQQQQQQQPQQQQQPQQQQPQQQPQPIDELYKCEVGGPIAFPGCSRPQDQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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