Aaln069134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphrophora alni
Gene Symbol
RREB1
Assembly
GCA_963513935.1
Location
OY740774.1:11568603-11579638[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.13 44 7.1 0.1 1 23 130 152 130 152 0.97
2 15 2.6e-05 0.0088 18.7 0.1 1 23 171 193 171 193 0.97
3 15 4.5e-07 0.00015 24.3 4.0 1 23 199 221 199 221 0.99
4 15 8.1 2.7e+03 1.5 0.1 1 21 306 327 306 330 0.72
5 15 0.076 26 7.8 0.5 2 23 336 358 336 358 0.94
6 15 0.00087 0.29 13.9 0.4 1 23 594 616 594 616 0.97
7 15 6.9e-06 0.0023 20.6 2.2 1 23 628 650 628 650 0.99
8 15 0.0041 1.4 11.8 4.4 1 23 656 679 656 679 0.97
9 15 0.00082 0.28 14.0 2.8 1 23 1122 1145 1122 1145 0.96
10 15 0.00096 0.33 13.8 0.5 2 23 1399 1420 1398 1420 0.97
11 15 0.15 52 6.9 4.5 1 23 1426 1449 1426 1449 0.97
12 15 0.0067 2.2 11.2 2.2 1 23 1488 1512 1488 1512 0.94
13 15 0.02 6.8 9.6 0.7 1 23 1599 1622 1599 1622 0.96
14 15 0.0038 1.3 11.9 0.5 3 23 1673 1693 1671 1693 0.96
15 15 0.0086 2.9 10.8 5.9 1 23 1699 1721 1699 1721 0.98

Sequence Information

Coding Sequence
ATGCAGGACACAGCGTTGAATATTCATGGCAGTTCGCCTTGTCCTGCTCCtttagATTTTCCTCATGCTCCATTCCAGAATTCATCTTCACCATCTAAAAAGACATCGGATGAACAGAAAGTAATGGATTTATCCAAAGTTGCGGCAGCTAAACAAACCAAAGATAATCATTATGAAAATACCAAAGATATTGTACACAAAACCAAAGAATTATCCAGTTGTGAAGAACACTACTTTAAACAAGAAGACTGCATAGCATCCAGAGAATCAAAGATGGAGATGTGCGACAACAAAGAATCTGAGAATGATgaAGAGAACTTTGGGTCTGAAGGGAGCTCTGATGATGGTGGTAGTCAGAAGACAAATGAAGAAGACTCAGAGAAAAGATATGTTTGTCCTATCTGTgatgtcattttattttcaccCCATGATTCAACTTTACACATTCGTTCtcataataataacataacatcGCCTGAACATTCACAATTATCAACAATTGGTAAAGGTTTCATCTGCAGCATCTGTGGCAAAGTGCTCAGTTCTTCTAGTTCATTGGATCGTCATGTTCTCGTTCATTCAGGCGAACGACCATTCAAATGTCAAATTTGTGGGTTTTCTTTCACAACGAATGGCAATATGCACCGACACATGAGAACTCATCCCAACGTTAATAAAACGGATAATTATGAAAGTGATGCTAGTTCAGACAGTTGTGGGAAAAGTTCGACGTCTCCTCCGCCAACAGTAAATTGTAAAAAGAGAAAAGTATCGAGAACTAATACAGAGTTTAACAATAATATAGAATTATCTCCACGATTAGTTTCTGATTTGAAAAGAAAAAGTCCAGACTTGGATGAaacaaaattaaggaaaataaaaactgatttaaagcAAGATCTGCCGTCACAAACTTTTAACTGTCCAGTCTGCAAACGTGTAAACTTTGCCACATTAAATGTCTTAGAAACACATTTAGAAGATTCACATCCTGAGTATAAAGCGAGATGTGATggatgtaatttaatttttaaaaactatagagTATTAAACCTGCATCGTTTTATGGTACATTTTGATGACTCGGATGAAATGATATCCACAGAAGGGACTGTTGGGTTCAAAGATTTAACTTTTGTAGATTTTTCCAGTGAAAAATTCCCCCATATTGCTCGAATGGTCTGCGAGCAAAGTCTTCATCACGCAAGCAGTATTTATCATAAATTTCAGTGCGAGAAATGCTGCCGTGCTTTCCCATGTGGTTCTGCTTTGAATATCCATCGACAAAGTTGCGGAATTACAAACTATGCTTCTTCTGGTGAGAGTAATTTAGAAAGCGACAATGAAATGCCAACTGATTTGAGTAATAGTAGAAGAAGAAAACAGTCATGGCCTGAAAGGAATTTCTCAGAATGTTCAGAAGAAGTGGAAGACGAACGTAAACGAGATCATTTCTTTGCTGGattagatttacaaaataaatcagttCCATTATCACCCGTAGATGACACTCCGCCAAGGTATGAAACATTTCAAAGTGATCGATACTTTAGTACAAATATGGAAGGTAAAGATCTAGCAGATATACAGAGTATAATATCCGTAACATCAGCTGGAAGTTTAATTCCAGATTTATCAAAATCACCTCAACCTACAGTATTAGAAGTAACACCACCGGATTCTGGATCTCGAGGTGGTGCCTATGATACAGGTATAGCGGATGAAGAATTACAAGATTGTTTTGCAgctgaatttagaaaaatgaagttACGCGGAGAATTTCCTTGTAGATTGTGTGACAAAAAATTTCCCAATCTTCGTGCATTGAAAGGACACAATCGTGTACATTTGACGAATAGTTCTGGCGGATCTAATGCCCCTTATAGATGCAATATGTGTCCACATTTTAGTTCAGATAAGTCTGCATTAATTAGACATATGCGAACACATAACGGTGATCGACCATATGAGTGTGGGTTGTGCCATTATGCATTTACTACAAAAGCAAACTGTGAACGACATTTACGAAATCGTCATGCAAAAATGACTCGTGAAGATgtgaaaaaatcaataatttatcatCCTTCAGAAGATCCTACGAATGATATTGAACAAAAGTCATCACGCGATGAAGTTAAAAGGTCGTTATTCTCTGAAAAAGATCAACTAAAAGAAAACAACTCTGTTGATATCCCAACTAAAATTCCTGTTGTTGAGGAACTAAAGATGCCAAAACTTGAATCTGCTTTGAGGAGCTACCATATTGAACCATTACATTCTACCAGTTCTTTTGTTCAAATTAAGAAACCTAATTATATATCCGCaaacattgaaaatgaaattcaTCAGCGTCGTAAAAGCCTTGATGTTGGTACTATGACATTTTCTGAGGATGAATCTATGGAACATTGTAGTAAAAATATACACCCATTGATAGTTCCACCAAAAAGAATTAATGTTGAAACTCCACTGGATTTAACAATGGATGTTTTGGATTTAagtaagaagaaaaagaaaatgaatgaTGATTTAGATGAAAAAATAGTTAAAGAAGAAATGATTGATGATTGTGAACCTCAGGATTTATCAAAGAAATCAAAGATGTGTGATGGTAGCACTATGACCAACAAACAGTCATCTCCAGTTTGTTTTGGCACTGTACAGAAACCTAATCTACCTTCATGTTTGCCTATTCCTTTTAGTCAAGAACTGAACGTATTAACACCTCCGTCAATGAATCAATCTTTTGAAACTCAGACAACACCTAAATTTTCACCTCCTACGATAACCATTCCTAAATTAGATCTTTCTTCACTTTATTCTGGTAGCCCTCATTTAAACCCACATCCATTTTATCCTCACGGTTTCCCAACATTCCCAACCAATACACCCTTACCACCAGGACCATTTCCTCCATATTTCATACCTCCTCCACCACCACATGTTATATTTCCAAGAAATCCACCTCATGATTTTGTGGAAATGAAAGAACGACTACAGAAAGAATTAATTCGTGGTTTACAATTAACATCAGGAGGTTCACTTGTTTTGGATCAGTTGGCAATGGCATCAGCTGCTGATCGTATTCAAGCATTACATCAACAAGCATTAGCTGAGTATTCTCGTCACCTAGAGTCGACTAAGATTGAACCAAAGACTTTTTCACCTacaataacaaatgaaaataaatctgtTCCACCACCACCAGAATCAGAAAAGATACAAAATAATGACCAAACAAAACACCAAGATAAATCAGCAGTTATGAAACCCCGACATGAATCTTCATCAGTTAAAATGGTGATCAAGAATGGTGTACTAATACCAAAGCAAAAACAACGTAGATATCGAACAGAAAGACCATTTTCTTGCGAACACTGTTCAGCAAGATTTACACTGCGTTCAAACATGGAACGCCATATAAAGCAACAACACCCTCAGTATTGGACGCAACGACAACGAAACGCAGGAAACATTACCATCAGAAGAAGTACTCAGAAAATTCCATCATCCTTTGTACCTCCACATGGTATATTCTCTCAAATTGATATCGGAACCAAAGAAAAAGATCATGATAATGATGACTATGATGAAGATAACGAAGATATGTCAAGATCATCAACACCTAATGATGATTTCAAATCTGAAATTGTACAATCGTTGAAAGGTGCTAGTGTAGAAGAAAAAACATATATATCTGATGAAGTTAAATATGCAATCGCCCAACAGTTAAAATCAAAACTTCAACCAACAGAAGATAGACAAGATGAGAAATATAATAGTGATTTCATTATGGATGATGAAGAAGTAGAAGAAAATGAAGAATTAGTGATTGACGAAGAAACAAGAGGAGAAGAAGATGAGAAAGAAGTAAAAAAGGAAGTGAAGAAAGATGATGAATTACAAATATCAAAAAGAATTATCAAAGAAGAAAATGTAGTGGATTTGGCAAGTGTGTCGAGGCTTTTGGATAATGCTTCAACTCAAACATTCCGTCAGTATTTCCGTTCAGAAGAAGACAACGCTGCTGGCGAAGGTAGTGAGGAAGATGAAGAAGGTCTCGTTGCTGGAAGTGCTAGCGAAGGAAATAATTCTGGTAGCGATGAAAACaaATCAGATGTAGACTTAAACACTAGTAACAACCTCAATGCTCCCAAAAAGAAGAGTGCATATTCATTAGCTCCAAACCGAGTATCATGTCCATATTGTTTTCGAAAATTCCCCTGGTCATCTTCATTACGAAGGCATGTACTTACTCATACTGGTCAAAAACCATACAAATGTTCATTTTGTCCTCTGCTTTTCACCACAAAATCAAACTGTGATCGTCATCTGTTACGTAAACATGGAGGAGGTACTGTTTCTGCGCCTGTTGAAAAGACTACGGCTCAAATACGATCTGAACCTATCGTCAACCAAACACCACAGAATTATACAATGCGAAATGTTCCAGAAAGGccatataaatgtaaatactgCCCAAGTTCAACATTCTCTACAATGAGCAATCTTAAAAAACATGTTgaaaataaacatcaaaattCTGGAAAAAATGACAGAGTTCCTGATAGTTCATTTAGCGGATACGAAAGTCAAGGTAGTTGTAGTGGTGAAATTGATGTAGATGGTGAGCAGCCGACTCTTCAAGATATTACGCCTgagaataaagataaaaaaacagtAATTGATGGGAGGGAAATACATCCGGGGCATTCTGAAAGTGTGCAATATGCAAAACCAACTCCTTTAGCAGTTGATCAGAATTATTCAACGCCGTTGAATGCTGACCTACCTTTTAAATGTCATCTATGTGATGGTAGTTTTTCTGAACGACAAGAAGCATTGGAACATATTCGTGAAAATCATTCGACAGAATTTCAACTTCTTGTTTCAAAAGGTGCTTTAGAAGCTAGTGGTTCTAATGAAGAAAACATCTGTTCTGAAGAAGGTGCAGGTGAAGAGAGCTTAGAACAACTTCGGGGGAAATTTCCTGACTATGCTAACAGAAAGgTTATGTGTGCTTTCTGCTTAAGACGTTTCTGGTCAGCGGAAGATTTACGTCGACATATGCGAACGCATACAGGCGAGCGCCCATTTTCTTGTGATATTTGCAGAAGACGTTTTACACTAAAACATAGCATGTTGCGTCATCGGAAGAAACATTCGTTCACACCAGCAACTCAAGGAGAAACTTCTCCTGGCAGTGATGATGAAGTTCATAATACAACATTACCAACCACCAATCATAACAACAATACAATACCAACTGTTAAACAGTGGTCAAGAACAAGAAATGATGAAGAAACAGACTTGATTAGCAATTTGTTGGGTATACAGGATAAATCGATTGTAGATAAAATGTTATTGTCAAAATCAGCTGATGATGCAGCGAAACTATTAGGCGTACAAAAGtga
Protein Sequence
MQDTALNIHGSSPCPAPLDFPHAPFQNSSSPSKKTSDEQKVMDLSKVAAAKQTKDNHYENTKDIVHKTKELSSCEEHYFKQEDCIASRESKMEMCDNKESENDEENFGSEGSSDDGGSQKTNEEDSEKRYVCPICDVILFSPHDSTLHIRSHNNNITSPEHSQLSTIGKGFICSICGKVLSSSSSLDRHVLVHSGERPFKCQICGFSFTTNGNMHRHMRTHPNVNKTDNYESDASSDSCGKSSTSPPPTVNCKKRKVSRTNTEFNNNIELSPRLVSDLKRKSPDLDETKLRKIKTDLKQDLPSQTFNCPVCKRVNFATLNVLETHLEDSHPEYKARCDGCNLIFKNYRVLNLHRFMVHFDDSDEMISTEGTVGFKDLTFVDFSSEKFPHIARMVCEQSLHHASSIYHKFQCEKCCRAFPCGSALNIHRQSCGITNYASSGESNLESDNEMPTDLSNSRRRKQSWPERNFSECSEEVEDERKRDHFFAGLDLQNKSVPLSPVDDTPPRYETFQSDRYFSTNMEGKDLADIQSIISVTSAGSLIPDLSKSPQPTVLEVTPPDSGSRGGAYDTGIADEELQDCFAAEFRKMKLRGEFPCRLCDKKFPNLRALKGHNRVHLTNSSGGSNAPYRCNMCPHFSSDKSALIRHMRTHNGDRPYECGLCHYAFTTKANCERHLRNRHAKMTREDVKKSIIYHPSEDPTNDIEQKSSRDEVKRSLFSEKDQLKENNSVDIPTKIPVVEELKMPKLESALRSYHIEPLHSTSSFVQIKKPNYISANIENEIHQRRKSLDVGTMTFSEDESMEHCSKNIHPLIVPPKRINVETPLDLTMDVLDLSKKKKKMNDDLDEKIVKEEMIDDCEPQDLSKKSKMCDGSTMTNKQSSPVCFGTVQKPNLPSCLPIPFSQELNVLTPPSMNQSFETQTTPKFSPPTITIPKLDLSSLYSGSPHLNPHPFYPHGFPTFPTNTPLPPGPFPPYFIPPPPPHVIFPRNPPHDFVEMKERLQKELIRGLQLTSGGSLVLDQLAMASAADRIQALHQQALAEYSRHLESTKIEPKTFSPTITNENKSVPPPPESEKIQNNDQTKHQDKSAVMKPRHESSSVKMVIKNGVLIPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQYWTQRQRNAGNITIRRSTQKIPSSFVPPHGIFSQIDIGTKEKDHDNDDYDEDNEDMSRSSTPNDDFKSEIVQSLKGASVEEKTYISDEVKYAIAQQLKSKLQPTEDRQDEKYNSDFIMDDEEVEENEELVIDEETRGEEDEKEVKKEVKKDDELQISKRIIKEENVVDLASVSRLLDNASTQTFRQYFRSEEDNAAGEGSEEDEEGLVAGSASEGNNSGSDENKSDVDLNTSNNLNAPKKKSAYSLAPNRVSCPYCFRKFPWSSSLRRHVLTHTGQKPYKCSFCPLLFTTKSNCDRHLLRKHGGGTVSAPVEKTTAQIRSEPIVNQTPQNYTMRNVPERPYKCKYCPSSTFSTMSNLKKHVENKHQNSGKNDRVPDSSFSGYESQGSCSGEIDVDGEQPTLQDITPENKDKKTVIDGREIHPGHSESVQYAKPTPLAVDQNYSTPLNADLPFKCHLCDGSFSERQEALEHIRENHSTEFQLLVSKGALEASGSNEENICSEEGAGEESLEQLRGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHSFTPATQGETSPGSDDEVHNTTLPTTNHNNNTIPTVKQWSRTRNDEETDLISNLLGIQDKSIVDKMLLSKSADDAAKLLGVQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-