Aaln049723.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- L
- Assembly
- GCA_963513935.1
- Location
- OY740770.1:111053238-111077479[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.9e-05 0.0063 19.2 0.2 1 23 10 32 10 32 0.98 2 20 0.00032 0.11 15.3 0.2 1 23 47 70 47 70 0.96 3 20 0.0039 1.3 11.9 0.2 2 23 176 198 175 198 0.96 4 20 0.42 1.4e+02 5.5 1.8 3 23 213 234 211 234 0.94 5 20 0.084 28 7.7 0.2 1 23 316 338 316 338 0.95 6 20 0.0023 0.77 12.6 2.4 3 23 365 385 365 385 0.99 7 20 0.0006 0.2 14.4 0.1 3 23 395 416 393 416 0.94 8 20 0.028 9.3 9.2 0.1 1 23 421 444 421 444 0.92 9 20 0.039 13 8.7 0.0 2 23 497 518 496 518 0.95 10 20 0.26 88 6.1 6.3 2 23 523 544 522 545 0.94 11 20 3.9e-05 0.013 18.2 2.3 2 23 649 670 648 670 0.96 12 20 0.0031 1 12.2 1.1 1 23 680 702 680 702 0.98 13 20 0.29 98 6.0 1.1 2 23 710 731 709 731 0.96 14 20 0.00041 0.14 15.0 0.0 2 23 812 834 811 834 0.96 15 20 0.85 2.9e+02 4.5 0.1 1 23 838 860 838 860 0.96 16 20 0.097 33 7.5 0.3 1 23 869 891 869 891 0.96 17 20 0.003 1 12.3 0.1 1 23 899 921 899 921 0.97 18 20 0.48 1.6e+02 5.3 3.5 1 23 928 951 928 951 0.94 19 20 0.00036 0.12 15.1 0.1 1 23 1008 1030 1008 1030 0.98 20 20 0.0002 0.069 15.9 6.3 1 23 1034 1056 1034 1057 0.95
Sequence Information
- Coding Sequence
- ATGAAAACTCACGATAATCAGAAACCCTTCCAGTGTACGGTATGCAACCGGGGCTACAATACCGCTGCAGCTCTGACGTCACATATGCAAAACCACAAGAAGTCCTGTGATGCCCTTAGTACACCGCCAGGATCCACGTTCAAATGTCTGCAATGTTCTGAAGTTTTTAGAAAACCAGAAGATTTACAAGGCCACATGGTGAGTCAACATAACGTAGAAGTCACCGGAACCTCTCCCGCCTCCCGCTCACCGAGGAGTCTCCGCAGGCCATCTCCGTCGTACTCCACGACACCTCGCCTTGCATGCATGTATTGTACCAAAGATAACTTCAGCACCATGGAGGCACTACAACTCCATGTCCAAGCTATGCATGGGGAACTGCATCCGGGACCAATTCTAAATGGTGAACTACATCGTGAGTTGATGTTCAACCCTCAATCAGCTGTGAGTCCCAGTCTCATCGCTCACCACCTACTAATGTCCTCACCACCAAGTCACACGCTCACCGGCAGTATTTTCCCAGTATCGTGCAATCTTTGCACAATGTCGTTCGGTAATATCCAAGCCCTTAACAAACACATCCTGATGAGTCATTACTTTCAGAAAGGTTTAAGTAAAGATCCGTCAGTTGTCTGTTGCAATCATTGTAACCTTCAGTTTGGTTCAGCGATGCTCTTCGTAGATCATTACATCATGTACCACAGTTCGTTTGGTGGCAGCCTTTCTCAACCTCCAAGTCTGCCTTCTCCCCTAGTAACGGAACAAGTGAAACCTACGGACTTATCCATGACAAAGAAAACGCCTAGAGCCAGTCACGATGACAGACCGCCTTCTGCAAAACGTTTCAAGATGTCGGAGAATGGATTTTCTTCTTCATCATCAAATGGAGTTGAATCGGCCCCACGAACGCCTGTTTTGAATCACCAGTACGAACATCCCGGCACATTTCTGTGTAATCAGTGTAACGCAGCATTGCCCGATTTTGAAGCCTTCCGAAAACACGTCAAATCCCACATAGAAGAAGCGGGCGGTCTACGTGGCTTATTGGGAGGAGCTACCGGGCCTGAACTACGTAAAAGTCCGGGAGTTGGATGTACACACTGCGGGGCTCACTTTCCTACAACTGACGAGCTAATGCAGCATCTCTCGTCacattttgtaaacactgttgtTGAATACGGCTGCCCGAGTTGTTTGAAACCTTTTACAAAACCAGACGATTTACAAAAACATCTCATGGATATTCATGCACATCATCTGTTCCGTTGTGCAATCTGCAAGGAAATGTTCGATTCCAAAGTTGCTATCCAGGTACATTTCGCAGTAAAGCACAGTCACGAGTCCAAACTCTACCGATGCAATTCTTGTCCATCCATTTCACCTTTCCACACAGAGTTGGAATTCAATATTCACGTTCGCGCTATACACATGCCTCAGCACATACCTTCGCCAAAACCTCAACTAGTTCAGTTGCCCACTCAACTTCTGCCTTGCATGTTTTGCCCGATGAGTTTTGGAACCGAACTCGAGCTGCAACTCCACATGGTTGTACATTCCAAACCTATCCACTGCCACCTGTGTCAAGAAGTATTTCACGTTGAGTTCCAGCTTGATATGCATATGCAGACGCATCATTCTAATCAAATGGTCAACGGAACAGAAGATCGAGATCGAATACCAACTCCTCATTCAAAAGCATCAAAACCGGGTCATAAAAATAACACTTCTtccaacaacaacaataacacgAACATCAGTAGAAGTAACTGTTCTGTCAGTTCTGAATCTGGTAAAAAACAAGAACAActcaacaataacaataacaatgttGGATCTTGTGATATTTGCGAACGTGGAGACTTCGCAAGCGATGCTGAGTTAGCGGCGCATCGAAAATTGGTACATCATATTAAGTCTGCATCTTCCTCTGGAAAGTTAAGCCTGAATTGTGCTTATTGCAATGAAAGCTGCAAATCACGCTCAGAACTGGAGAATCACATGAAATCACATTCCCAAGGCTCAGTCACAGCTGGCAAACATAAATGCAACATATGTGATGAAATGTGTCCATCTGCAGCTTTCCTAGCTGAGCATAAACTTACTCATTGCAAGGTTATCAGCAGTACTTCCTGTACACAATGCAAATCAGCAATCACGAACGAGGATCAATTCTACCAACATCTACGTCAGCACAGTAGCAGCTCTAGTACAAACAACGGCAGCCCAACAATCCAACTTATCTTGCCCACAGCCTGTGTGATCTGTCGACAAACTTTAGTCTCCGATATGGAAGCTCGTATGCATGCACGCTTCCATCTCCAACAATCCGAAACATCACAGTGCTGTGTTTGCCTTCAAGGATGCGAGAGGAAGGATTTGATCGGTGGGATTTGTAAGGATTGTTACAGAAGACATGGTAAATCCTCACCGACGAGATGTCCAGAGTGTCAACTAAAGTTTGAGACAAGCCCTGCGTTGGAAGCTCATTTAGCAACCGTCCATAGGAAAACCTATCAGTGTATTAAATGTCAAgttagttttgaAAGTGAGCGGGAGATCCAACTCCACGTCGCTTCACATCTGTTATCCGAAGGCAATGGAGGACACGAATGCAGGCTATGTCTTCGCGTCTACGGCTCACCGCTGCAACTACAAACACATCTTATCGAGCATAACTTCGTCGGATGCCCCACCTTCTCTTGTTACATCTGTAGCGCCGTCTTCACCGCTCCCCAGGGCTTACAGACTCACATGCTGGATCATGGTTTGTCTGCTCGTCCGTTCGACTGTCATCGTTGTTCGCAAAGGTTCTTCTTTAGAACGGAACTCGACAATCACAGATATGTTGCACATGATGAGGATCCTAATGATGATCGAGGAAAGAATGCTTATTATCAATATATGAGCAAAATAGAAACCCTAGAGACATCATCTTTGACAGGTGGGAACGGTCTAGATGTAAACCTACAAGACATTCAAAACAGTAAGAATGGAAAACAACTTACAAAACAAACTAGTAATTTTAAATGTACTGAATGTAACGGAGAAGTATCAAGCGCAGCGAGTCTTCAAGCACACATGAAACAACATCGAAAGTTTCATGTTTGCGTCGAGTGCAATCAACAATTTAACCATTCGAAAAATTTACAATTGCATATGCAAACGCATCACAGTAAAGAAAATTCACCGACAACATCGGTACTTGACACAATATCAGAGATCAAACAAGAAATCAAGCAAGAAAATATCGACGCCGATAATGAAGATGACGAAGAACAAATCGATGTTGGAGATCATCATAACAATGAAGACACTACAAATGAACCTTTAATAGCAGACAAAAGTGTTGATGATTCTCATTGTAAAAGTGAAACgacataa
- Protein Sequence
- MKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKSCDALSTPPGSTFKCLQCSEVFRKPEDLQGHMVSQHNVEVTGTSPASRSPRSLRRPSPSYSTTPRLACMYCTKDNFSTMEALQLHVQAMHGELHPGPILNGELHRELMFNPQSAVSPSLIAHHLLMSSPPSHTLTGSIFPVSCNLCTMSFGNIQALNKHILMSHYFQKGLSKDPSVVCCNHCNLQFGSAMLFVDHYIMYHSSFGGSLSQPPSLPSPLVTEQVKPTDLSMTKKTPRASHDDRPPSAKRFKMSENGFSSSSSNGVESAPRTPVLNHQYEHPGTFLCNQCNAALPDFEAFRKHVKSHIEEAGGLRGLLGGATGPELRKSPGVGCTHCGAHFPTTDELMQHLSSHFVNTVVEYGCPSCLKPFTKPDDLQKHLMDIHAHHLFRCAICKEMFDSKVAIQVHFAVKHSHESKLYRCNSCPSISPFHTELEFNIHVRAIHMPQHIPSPKPQLVQLPTQLLPCMFCPMSFGTELELQLHMVVHSKPIHCHLCQEVFHVEFQLDMHMQTHHSNQMVNGTEDRDRIPTPHSKASKPGHKNNTSSNNNNNTNISRSNCSVSSESGKKQEQLNNNNNNVGSCDICERGDFASDAELAAHRKLVHHIKSASSSGKLSLNCAYCNESCKSRSELENHMKSHSQGSVTAGKHKCNICDEMCPSAAFLAEHKLTHCKVISSTSCTQCKSAITNEDQFYQHLRQHSSSSSTNNGSPTIQLILPTACVICRQTLVSDMEARMHARFHLQQSETSQCCVCLQGCERKDLIGGICKDCYRRHGKSSPTRCPECQLKFETSPALEAHLATVHRKTYQCIKCQVSFESEREIQLHVASHLLSEGNGGHECRLCLRVYGSPLQLQTHLIEHNFVGCPTFSCYICSAVFTAPQGLQTHMLDHGLSARPFDCHRCSQRFFFRTELDNHRYVAHDEDPNDDRGKNAYYQYMSKIETLETSSLTGGNGLDVNLQDIQNSKNGKQLTKQTSNFKCTECNGEVSSAASLQAHMKQHRKFHVCVECNQQFNHSKNLQLHMQTHHSKENSPTTSVLDTISEIKQEIKQENIDADNEDDEEQIDVGDHHNNEDTTNEPLIADKSVDDSHCKSETT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -