Basic Information

Insect: Aphrophora alni
Gene Symbol: -
Assembly: GCA_963513935.1
Location: OY740767.1:688497-689432[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.1 3.8e+02 4.2 0.0 9 23 2 17 1 17 0.92

2 11 0.15 50 6.9 1.0 3 23 29 49 28 49 0.90

3 11 5.2e-05 0.018 17.8 4.5 1 23 55 77 55 77 0.98

4 11 0.00013 0.045 16.5 0.4 2 23 84 105 83 105 0.97

5 11 3.6e-05 0.012 18.3 0.4 1 23 111 133 111 133 0.97

6 11 8.1e-06 0.0027 20.3 0.5 1 23 139 162 139 162 0.95

7 11 1.8e-05 0.006 19.3 3.8 2 23 173 194 172 194 0.98

8 11 0.0012 0.4 13.5 3.8 3 23 202 222 200 222 0.97

9 11 3.3e-06 0.0011 21.6 1.3 3 23 230 250 229 250 0.98

10 11 1.5e-07 5e-05 25.8 1.6 1 23 256 278 256 278 0.98

11 11 0.0026 0.87 12.5 0.9 1 21 284 304 284 305 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.1	3.8e+02	4.2	0.0	9	23	2	17	1	17	0.92
2	11	0.15	50	6.9	1.0	3	23	29	49	28	49	0.90
3	11	5.2e-05	0.018	17.8	4.5	1	23	55	77	55	77	0.98
4	11	0.00013	0.045	16.5	0.4	2	23	84	105	83	105	0.97
5	11	3.6e-05	0.012	18.3	0.4	1	23	111	133	111	133	0.97
6	11	8.1e-06	0.0027	20.3	0.5	1	23	139	162	139	162	0.95
7	11	1.8e-05	0.006	19.3	3.8	2	23	173	194	172	194	0.98
8	11	0.0012	0.4	13.5	3.8	3	23	202	222	200	222	0.97
9	11	3.3e-06	0.0011	21.6	1.3	3	23	230	250	229	250	0.98
10	11	1.5e-07	5e-05	25.8	1.6	1	23	256	278	256	278	0.98
11	11	0.0026	0.87	12.5	0.9	1	21	284	304	284	305	0.96

Sequence Information

Coding Sequence: ATGACATTTGCAAATAAAGATGAACTGGATGAACATATAGAAAGTCAACACGTGGAAATTCATAACATTCAAAAGAATAATCAGTGTATCACTTGTGGTAAAATTTGCCcttccaaaaaaatattaaagcgCCATTTAGTAGTTCATAGTAAAGATAGACCATATTCTTGTGATATTTGTcataaaacatacaaaaggtCATATGATATAACCATACATAAAAAGAAACACACTGGAGATAAAACACTTTCCTGTGACATATGTGATTACACTACGATTTATAGATCAGCATTGGCTACACATCGAAAGAGGCATTCACAAGAATTTAAATATCGTTGTGAAATTTGTGGTAAAGGTTTTTTTGTTAGTAGTTGGCTACTGGAGCACAAGAATTtccatactggagaaaaaccatttcAATGTGACATTTGTGGTAAATCTTTTCCATACACACGGTATTTGGTTGCTCATAAAAAAGCAAATCACCCTGATCAAAACAACCCTGCAAAGAAGAATCAATGCACTACTTGTGGAAAATTGTTCTCACATAAGAAATCCTTAACTCTTCATGTTAGATCCCATACAGgtgaaaatgtttgtttatgtGATATTTGTGGCAAAGCACTTACAAATAAAGAACATTTGAAATTTCACCGACGGATTCATACTGGAGAGAAACCTAACATTTGTGGTGTATGCGGCAAAGGTTTTGCCAAAAGTTGTAACTTAACATTACATCAACGTACACATACAGGTGAACGACCTTATACTTGTGAAGTATGCAACAAATCATTTTCTCAACGATCAACTCTTGTCATTCATAGACGCTATCATACAGGTCAAAGACCTTACACTTGTGAAGTTTGTAAAAAAGGTTTTGTTTGTAAAGCATTACTTACAACTCATCAGAAAGGAAGTTGTGTTCAGCCTCAGTGA
Protein Sequence: MTFANKDELDEHIESQHVEIHNIQKNNQCITCGKICPSKKILKRHLVVHSKDRPYSCDICHKTYKRSYDITIHKKKHTGDKTLSCDICDYTTIYRSALATHRKRHSQEFKYRCEICGKGFFVSSWLLEHKNFHTGEKPFQCDICGKSFPYTRYLVAHKKANHPDQNNPAKKNQCTTCGKLFSHKKSLTLHVRSHTGENVCLCDICGKALTNKEHLKFHRRIHTGEKPNICGVCGKGFAKSCNLTLHQRTHTGERPYTCEVCNKSFSQRSTLVIHRRYHTGQRPYTCEVCKKGFVCKALLTTHQKGSCVQPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -