Aaln088180.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphrophora alni
Gene Symbol
-
Assembly
GCA_963513935.1
Location
OY740779.1:23184211-23204318[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00086 0.29 13.9 0.8 2 22 395 415 394 415 0.93
2 15 0.011 3.7 10.5 3.8 1 23 495 517 495 517 0.98
3 15 1.7e-05 0.0056 19.4 3.2 1 23 531 553 531 553 0.98
4 15 0.0017 0.58 13.0 1.1 1 23 558 580 558 580 0.98
5 15 0.14 47 7.0 0.7 1 23 586 608 586 608 0.98
6 15 0.032 11 9.0 0.0 6 23 619 636 619 636 0.98
7 15 0.0061 2.1 11.3 1.4 1 23 642 664 642 664 0.98
8 15 0.00032 0.11 15.3 3.0 2 23 674 695 673 695 0.98
9 15 0.00019 0.065 16.0 0.5 1 23 701 723 701 723 0.99
10 15 7.2e-06 0.0024 20.5 0.4 1 23 729 751 729 751 0.98
11 15 0.00068 0.23 14.3 1.8 1 23 757 779 757 779 0.95
12 15 0.01 3.4 10.6 0.4 1 23 785 807 785 807 0.95
13 15 0.8 2.7e+02 4.6 1.7 1 23 813 835 813 835 0.97
14 15 4.9e-05 0.017 17.9 2.5 1 23 841 863 841 863 0.98
15 15 2e-06 0.00069 22.2 3.9 1 23 869 891 869 891 0.99

Sequence Information

Coding Sequence
ATGTCAGCTGACAAGTCAGATGCTGGTACTACTCAGACGAAGTTAAGCACCAGTTGGATTTACAATCTGAAGCGGCTCGAGCTACAGGAGGAACTAAATAAGTTTAATCTTCCTACTGGAGGTACAGTTAAAGAAGCACGGCAATTATTGAGGaagtattttaagaaaaattgtcTAACACCATCCCTGGACCAGGAAACTAGCAATACAAGATCGGAAGACAATGAACAAGAAACTGAAATGTGCTCATTTGCAACTGTTGAATGTATTAAGACAGAAGACGAAGATGCACCATCGTCTACTTGGATGAATCCAGATGATGTAGTCGACCCTCTCGCATTTGGGAAACCTAAAACAGAGGATGTTGGAAACTTTTCTCAAGAGATGACCTTAGATCATCTTCCCATGACGACAGCAGAACCTATGTTGACTTCATCAGATCTTGTTTACATTGTGAAAACAGAAACTGTTCCGCCTACCTTAGATCTTATTCCTGTTGTGAAAACTGAACCTAGGCCACCTACCTTGGACTTGGTTCGGACCATGAAAGCAGAACCCGTGTCTCCTTCATTATATCTTGTTCCCATTGTGAAAGCAGAACCTGTGTCACCTACTTTACATGTTACTCCAGTTGTAAATACAGAAGAACCTGTGCCACCTTCTTTACATGTTATTCCAATTATGAATGCAGAACCTGTGCCACCTTCTTTACATGTTATTCCAATTGTGAATGCAGAACCTGTGACACCTTCTTTACATGTTATTCCAATTGTGAATGCAGGACCTGTGCCACCTTCTTTAGATGTTATTCCAATTGTGAATGCAGAACCTGTTACACCTTCTTCACATGTTATTCCAATTGTGAACGCAGAACCTGTGCTACCTTATTTACATGTTATTCCAATTGAGAATGCAGAACCCATATCACCTTCATCTGTGCTAGCTGGATGTAAGATAAAAACTGAGGTGATACAAACACAGACTCAAGTTCAGGATGAACTCTTACGTTGTTTATTTAATGTGAAAGAAGAGCTCCCATCTTGTTCTTATGAATTCGAAGCTGTTGAAAGAGAAAAGGAATttggaaatattgaaataaaacaagaaaaggaAATTCCTACAGTGAAGGAAGAATTAGACTTGGATTTAAGAGTGACTGAAGACGACGATGATGTATTGCTGCCATGTGAATTCTGTGACTTTTGTTTTACGTCGAATTTCGATTTGGAAGCTCACAGATTGACTTGTCCTCCACAAAGTAAAGATACTTCACAAAGTAAAGAACCTTCACAAAGTAAAGAACTTACACAAAGTAAAGAACCTTCACAAAGTAAAGAACTTACACAAAGTAAAGAACTTACACAAAGTAAAGAACCTTCACAAAGTAAAGAACCTTCACAAAGTAAAGAACTTACACAAAGTAAAGACAACGGTCAAACGGaagatataattattaacatttctgACGACGAAGAGATTTGGCATGTTTGtactaaatgtaaatttaaaactacattcGTTTCAGATTTTGAAGTTCATATGAGATCTCATGATGTACTGTACTCTCTAATACTGGATGGAGAAACCCctcataaatgtaaaatttgtggtGCACGATTTGTAAAGAGCCATGGTCTCACAGTACACATGAAATCTCACATTGTAAATCCTTTCATGTGCAAATTATGTGACTACAAATCTCAATCAAGGGAAACTCTTTCGGTTCACATGTTGACGCACACTAATGAAACTCCGTACGAGTGTAGAATATGTGATTTTAAAACGCAATTGTCCAGTGATATAGGAAGACACATGTTTACTCATATTGATGAGGAAAAAAACTCTTGTATTCCGTGTGACAAACCATTTGATCGTAAAAGTTTTGTTATCGAACACATGAGCATTCACACTGTTAATAAGATCTACAGTTGTAACGAATGTCAATATAGATATTTTGAAATAGGTGTTCTTACAAAGCACATGAAAAAACATACTAATGATGAATCTGTAAGCGTTTCTCGTTGTGATTTGTGCGACTATAAATGCGCAAAAAGATCTAAACTTATATTGCATATGAGAACTCATACTGGTGAAAAACCGTACAAATGTAATGTGTGTGATTTTAAAACAGCTGTGAATTCGACGCTTATCACTCACGCAAGAACACACACCGGTGAAAAACCCTACAGTTGCACCGAATGTGATTATAAGGGAAGGACAAGTGTAAATTTAAACGTTCACATGAGAATTCATACCGGAGAACGACcgtttttatgtaatatatgtgataataaatacagaagtaGTCGTGATCTTTCGAGGCACAAGAAGATTCACACTGGAGACACGCCGTTCCTTTGTGAGATCTGTGGAATATATCAAAAGTCTTCTAAAGACTATAAGGTTCATATGAGAATACATACTGGCGAGAGACCTTACAGTTGTAATATGTGCGAGTATAAGGGTAGATGTAAAATTAGTATAGTGGCTCATATGAGAACTCATACTAAAGAGAAACCGTACAGTTGTAAATTTTGCGACTATAAATGTGCAAGGAATGGTAACCTTGTGAAACATGTGAGAATTCACAGCGGAGTTAAACCTTACacgtgtaatatttgtaattacaaGTGTTCAAATAGTAGTAATCTTAACACTCATATTAAAATGCACAAAAGAATAGCAGTAAAATCACTATCTTGa
Protein Sequence
MSADKSDAGTTQTKLSTSWIYNLKRLELQEELNKFNLPTGGTVKEARQLLRKYFKKNCLTPSLDQETSNTRSEDNEQETEMCSFATVECIKTEDEDAPSSTWMNPDDVVDPLAFGKPKTEDVGNFSQEMTLDHLPMTTAEPMLTSSDLVYIVKTETVPPTLDLIPVVKTEPRPPTLDLVRTMKAEPVSPSLYLVPIVKAEPVSPTLHVTPVVNTEEPVPPSLHVIPIMNAEPVPPSLHVIPIVNAEPVTPSLHVIPIVNAGPVPPSLDVIPIVNAEPVTPSSHVIPIVNAEPVLPYLHVIPIENAEPISPSSVLAGCKIKTEVIQTQTQVQDELLRCLFNVKEELPSCSYEFEAVEREKEFGNIEIKQEKEIPTVKEELDLDLRVTEDDDDVLLPCEFCDFCFTSNFDLEAHRLTCPPQSKDTSQSKEPSQSKELTQSKEPSQSKELTQSKELTQSKEPSQSKEPSQSKELTQSKDNGQTEDIIINISDDEEIWHVCTKCKFKTTFVSDFEVHMRSHDVLYSLILDGETPHKCKICGARFVKSHGLTVHMKSHIVNPFMCKLCDYKSQSRETLSVHMLTHTNETPYECRICDFKTQLSSDIGRHMFTHIDEEKNSCIPCDKPFDRKSFVIEHMSIHTVNKIYSCNECQYRYFEIGVLTKHMKKHTNDESVSVSRCDLCDYKCAKRSKLILHMRTHTGEKPYKCNVCDFKTAVNSTLITHARTHTGEKPYSCTECDYKGRTSVNLNVHMRIHTGERPFLCNICDNKYRSSRDLSRHKKIHTGDTPFLCEICGIYQKSSKDYKVHMRIHTGERPYSCNMCEYKGRCKISIVAHMRTHTKEKPYSCKFCDYKCARNGNLVKHVRIHSGVKPYTCNICNYKCSNSSNLNTHIKMHKRIAVKSLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-