Aaln016387.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740766.1:35886475-35914297[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00038 0.13 15.1 0.1 1 23 136 158 136 158 0.95 2 28 2.1e-06 0.00071 22.2 0.1 1 23 176 198 176 198 0.98 3 28 0.0024 0.8 12.6 0.6 1 23 218 241 218 241 0.97 4 28 2.4e-06 0.00081 22.0 0.5 2 23 248 270 247 270 0.96 5 28 0.00054 0.18 14.6 0.8 3 23 358 379 357 379 0.92 6 28 0.0022 0.75 12.7 0.8 1 23 418 441 418 441 0.95 7 28 0.48 1.6e+02 5.3 2.5 3 23 449 470 447 470 0.95 8 28 2 6.9e+02 3.3 1.0 1 23 482 504 482 504 0.97 9 28 0.0007 0.24 14.2 0.7 2 23 542 564 541 564 0.95 10 28 0.01 3.4 10.6 0.1 2 23 613 636 612 637 0.90 11 28 0.37 1.3e+02 5.7 0.0 2 23 646 668 646 668 0.94 12 28 0.14 47 7.0 0.0 1 23 674 697 674 697 0.94 13 28 0.00037 0.12 15.1 3.8 1 23 704 726 704 726 0.97 14 28 10 3.4e+03 1.2 0.1 2 23 757 780 756 780 0.85 15 28 0.0013 0.45 13.4 0.4 2 23 784 806 783 806 0.95 16 28 0.23 79 6.3 3.3 2 23 813 834 812 835 0.94 17 28 0.18 59 6.7 3.6 1 21 859 879 859 880 0.93 18 28 0.00011 0.038 16.7 2.4 1 23 901 924 901 924 0.97 19 28 5.5 1.9e+03 2.0 0.5 1 23 927 955 927 956 0.80 20 28 0.13 43 7.1 0.8 2 23 962 985 961 985 0.93 21 28 0.06 20 8.2 1.0 2 23 993 1015 993 1015 0.96 22 28 0.0023 0.77 12.6 0.5 3 23 1054 1074 1053 1074 0.97 23 28 1.7 5.6e+02 3.6 1.1 3 23 1081 1101 1080 1101 0.95 24 28 0.079 27 7.8 0.5 2 23 1189 1211 1188 1211 0.94 25 28 0.51 1.7e+02 5.2 0.9 3 23 1219 1240 1217 1240 0.95 26 28 0.83 2.8e+02 4.6 0.4 2 23 1252 1273 1251 1273 0.94 27 28 1.7 5.8e+02 3.6 0.6 1 19 1285 1303 1285 1308 0.87 28 28 1.2 4e+02 4.1 0.3 1 23 1336 1358 1336 1358 0.95
Sequence Information
- Coding Sequence
- ATGTTATTAAAGTTCATATCTGTGACTACTCGATATGATGCAGCTTCAGAGGATGACAACAATTCTGTTATAAGTGTACGTTCCGATTACTCTGATAGCCAGGAGCCGAATCCTGCAGACTTCCTAGAAGCTCGCAtgAATGCTAGTCCCTACCCAACCATAATATTCTCTAAAAGTGTTCTCATTGTAGAAAGACTATTTCAGAATATGAGTTATGACCACCAAGGAACGATTTCAGGTGCAAATAGAGGCAATGTCAGAGCTGTACGTGGTCATTCTGATCCCAGCCAAAGTCCTGTAAGAGTTGTCGTGACACGTTTACAGTGTGAGGACAATGAACCAATCCAAATATCAAGAAATGAAAACCATGTAACAGAGCAGGTGATAGAAGTGAATGCAGGATCATTTGCATGTCCTGCCTGCCCCAAGAGCTTCAGTAACATGTCAGCTCTTATTATCCATTCCAAgTTGCACATGGCTGGTGGTAGTGCTTCTATGTCAGCTGAAAAGAAAGATCAACGCATGTTTCCTTGCCCAGTGTgtgaaaaaacttttatttctaaaGGAAACCTTTCAAATCATGTCAAGATCCATTCATATGAACCCAACACTATCAATCGTCAGCCACGGGAAACCAATACTGTTCGGCCATTCCAATGTGAGCTATGCAGTAAGACTTACGTTGTGGCTAAACATTTATGGGGCCATGTTAGTACGTCTCATCGTGGTGATCCAAGAGTCACATGTCCCTACTGTTCTCGTACTTTTTCAACACCTGCTAATCTTGAAGAACATAAGAGATCAAAACACATACATGAAATAGGTCCTTTTCAAgagattgaagAAAACAGTATGACAATAGCTGATTCTATAAGCATTGATGAAAGTCAAGATTCAGGAGAAGCAGTTGGTAAGTCAGTATCTGAAGAATTTTGTGGTAGTAGGCGGAAAAATACTAAACCTCGCAAGATTGCTAGAGAACACAGTAATGATACAGATAATTGCAATTCATACTCTCATGCAGATACTGAAGAAGAATCAATTGTAGTAAATGAATTGTCGAATAGAAGTTGCCTGTTATGTGCGAAAACATTTTCTAACCGTAGTGGGTTGAGAAGACATTTGTATAACGTTCATGGACTTGATCCTAATGAAGTAGAAGCTCAGAATGTTGCAATGCAAGATATAATGATTAAGAAAGAAATGGAAGAAAGTGAAATGGTTGAAAGTTTGGTAGAGGCAGAGACAGTGTTTTGCTGTGAAGTGTGTGTTCGTGAATTTAATGACAGAGCAAGTCTCTGGTTACATATGCTGTATTCTCATCGAGAAGAAGCAGCCACAGCATGTGGAATATGTTTGCAAGTTTGTTCAGACAATGTTAGCCTTTTAGAGCATATTCATAGTTGTCATCCTAAAGAATCTCTAGGATCAGAAAAACGTAGATACAGTTGTCAGATTTGTGCTCGTCAACACGATTCACGTAAAAAATTAGTTGCCCAtgtaaaaatacacaatttgCAGGATGAAGATGGTCAAGCGCTAGATCCAGAATCTTTGGTTATTCTAAACAATGATTTCTATGGTCATGATCAATCACTTCGTAACGATGATGATTTCAGTTTAAGTTGTGAAGTCTGTTACAAAAGTTTTCCTTCAgagaataaattaatgaaacataaaCGTAATGCTCATAAAGATTCTCAAAAACTACATAGTTTAAACAGTTCTAATACATATCATTCCTATTTTTCATGTGAATTGTGTGGTTTATCTCATGCTACACGAACAGAAAGATGGAAACATGTGTTTCGTTGTCATTCTGATGAACCTTCTTTAGTTTGCGAATTACCAGATTGCGGTAAAGTATTTCCAACACGAGCTCTTAAGATTGATCATGCAAGCACTCATCATCAACAACAAGGTGATATGCCAAATACTTGCGAAATATGTGGTAATATTTGGGCTACAAGAATTAATTATTGGAAACATATGATGGGTGTTCATCGAGATTCTTTGCCTTTTATATGCGGTGTCTGTCTGAAAATATTCGTTAGTATCCCGGATTTAGCTTCACATGTCCAACAAAAACATAAAGCTGATGGGCCTGATTTTTGTTGTGATATTTGTGGTCGACCGTATACAAAGAAATCTAAAATGTCTAGGCACAGAAAAATCCATAACATACCATTTTCTGAGGGTGGTCTTCAAGAGGGTCAATTTGAAAGTCAGGCAAAAGGTAATAGAGGTGATGATTCGTTATTACAACTAAGGTGCGAAGAATGTCCAACTGAAGAATTCTTGGACTTGGAAGAGCTTTCCGAACATAGAAGGTCTGCTCACAACCTTGTACCTTGCGATTTATGTCCAAAGTATTATGGTCGTACATCACATCTTTGGAAGCATGTTAACAAGATACATAAAGGACATACAGACATTACTTGTAGCATTTGTCTTCGAACATCAGCATCCAGAGTCCATCTTTCTAAACATTTTGCAAAACACCATCGTGCATTAACATCAGATAATGCAAACTGGCATGATGATGTTACAAATAACAGCACTGAAGATTCGGTTCATACATGTACAAAGTGTTTGAAAGTGTTCCGTAAAGATTATTTAATGCAGCAGCATTTAAAACATTGTACAGGACCTCGTAGTACTCCAATCAGTAATACTTCATCTTCTACTGTTAATGGAACTTTCCCAtgtgaaaaatgtaacaaaatctgTGAAACAAGGAGTAGTTTATATAAGCATATCAAAGTATCTCATATTATGTATCCTTGCGAGCTGTGTGAAGATGAATCTAAGAATGAACTGTTTGATACTAAGACTAaattatttgatcatattttgaaAGCTCATCATAAGCATCCTGATTTAACTTGTGATGtaccaaattgttttaaaatgcttCGGTTAAAGAAAGATCTTTTGAAGCATAGACGTGAACACCGTCAAGGTTATCCTACACCGACATGTGATTTTTGTGGTGAGTTGATAACAAATCGAATAAAATTACGTAAACATTTGAAATCCAATCATCCTCAACACTCCAAATGGGTTTGTTATGTTTGCGCAGGGGTTGAACAGAGTTATGAAAAACTTGGTGTACACATTAAAGAAAACCATCCGATGCTTgttggaaaacaaaatatttgcccAATTTGTGCGAAAAGATGTGGAACGAGATACAAGTTGCTTGCTCATATTAAAATACACGGAGATGAATTTTCTCTTTGTGAAGCTTGTTggattgtatttcaaaataaagaggAATTTAATGAGCATTGTAAAACCCATGTAAATGATGAAGACGAAGTGGATGCTTCGGAACTAGATGAGTCTGggataaaaagaaaacattcaGGGAAAGATGAGGGAACacctaaaaaattcaaatatgatcgtaattatgaaaataaagaatttaagcCGTGCGTGATGATTccaaataaatctattttagaTAGCAGTTTAAATTCTTCAACTTATTCAAACCCATACTCTACTGCAGGTATATGTAAGAATCGTAAGGTTTATGAAGGAGATGATGCAGATTGTATCTGTGAACTTTGCGGTAGAATATGGGCTTCAAAAAAACAATTATGGCAACATCTGATCAGATCTCATAGTACAGATGCAGCTACCGCTTGTGGAGTTTGTCTTAAAATGTGTAATAACTATGTAAACCTTGATATGcatttgataaaaaaacatcCTGATAATTTCGAAGGTGAAGGAAATcatttaaattgtagaatttgcGGAAAATTTCACCCTTATTATGCAAAGTTGCTGAACCATATTGCTATTCATGTAGGTGAAAAGAAACGAGCTCAAGATTTAGTATTTGCTTGTTctgtttgtaatattattttcgaAAATCAAACTATTTTGTGTCAGCATAATGTGGACAATCATAAAGATATGATATTACCGGAAGAAGATGAGGAAGATGATGAGGAGGAAGATGAAGAAGTAGAAAATGAAGAACAAAACTTACACCAATGTGAAGTTTGTGATGAAATATTGGAAGGAATGGATTTGTTTTTAGAGCATAGCAGGAAACATAGATTAGAAAATGATAGCGAAACAAGAATatcagaagaagaagaaagcacTAACCTGACAGCTGATGATGAACCTAAATATGTTGATCACACGTTTAGTGAAGTAGAAGACCAGGAATTGGATCATGAAATAGACCCGATAATTAATGATGAAAATTTAACCAATTCATCAAATGATAAAGATTATGTTGAAAGTATTTTGAGTGGTGATAATACAATTGTTGTTCAAAGAACTGAAGATAGAAATAATATTGAACaaataagtagtaataattttcaatgtaaagaagaaaatatggaaaataatgtGACTGTGAAGAAAGAAATAATCATTGAGGATATAAATAGTATAGTGCCTCAGTTTGTTTCAGACATTAAAAAGTGTGATGAACAAAGACCTTGCGATAGtgttgttaaaaatgaaataaatgagtTTAGTAGTTCGGTAAATGATAATAGTAGAGATATGTTGCAGGTGGATAATCAACATTTAtcaagaaatatttcagaacaggGTGTGACCGACTTGGGTGAGGTTTTAAAGAATCAGAcaactgaattaaatttaatggaGGTGTAA
- Protein Sequence
- MLLKFISVTTRYDAASEDDNNSVISVRSDYSDSQEPNPADFLEARMNASPYPTIIFSKSVLIVERLFQNMSYDHQGTISGANRGNVRAVRGHSDPSQSPVRVVVTRLQCEDNEPIQISRNENHVTEQVIEVNAGSFACPACPKSFSNMSALIIHSKLHMAGGSASMSAEKKDQRMFPCPVCEKTFISKGNLSNHVKIHSYEPNTINRQPRETNTVRPFQCELCSKTYVVAKHLWGHVSTSHRGDPRVTCPYCSRTFSTPANLEEHKRSKHIHEIGPFQEIEENSMTIADSISIDESQDSGEAVGKSVSEEFCGSRRKNTKPRKIAREHSNDTDNCNSYSHADTEEESIVVNELSNRSCLLCAKTFSNRSGLRRHLYNVHGLDPNEVEAQNVAMQDIMIKKEMEESEMVESLVEAETVFCCEVCVREFNDRASLWLHMLYSHREEAATACGICLQVCSDNVSLLEHIHSCHPKESLGSEKRRYSCQICARQHDSRKKLVAHVKIHNLQDEDGQALDPESLVILNNDFYGHDQSLRNDDDFSLSCEVCYKSFPSENKLMKHKRNAHKDSQKLHSLNSSNTYHSYFSCELCGLSHATRTERWKHVFRCHSDEPSLVCELPDCGKVFPTRALKIDHASTHHQQQGDMPNTCEICGNIWATRINYWKHMMGVHRDSLPFICGVCLKIFVSIPDLASHVQQKHKADGPDFCCDICGRPYTKKSKMSRHRKIHNIPFSEGGLQEGQFESQAKGNRGDDSLLQLRCEECPTEEFLDLEELSEHRRSAHNLVPCDLCPKYYGRTSHLWKHVNKIHKGHTDITCSICLRTSASRVHLSKHFAKHHRALTSDNANWHDDVTNNSTEDSVHTCTKCLKVFRKDYLMQQHLKHCTGPRSTPISNTSSSTVNGTFPCEKCNKICETRSSLYKHIKVSHIMYPCELCEDESKNELFDTKTKLFDHILKAHHKHPDLTCDVPNCFKMLRLKKDLLKHRREHRQGYPTPTCDFCGELITNRIKLRKHLKSNHPQHSKWVCYVCAGVEQSYEKLGVHIKENHPMLVGKQNICPICAKRCGTRYKLLAHIKIHGDEFSLCEACWIVFQNKEEFNEHCKTHVNDEDEVDASELDESGIKRKHSGKDEGTPKKFKYDRNYENKEFKPCVMIPNKSILDSSLNSSTYSNPYSTAGICKNRKVYEGDDADCICELCGRIWASKKQLWQHLIRSHSTDAATACGVCLKMCNNYVNLDMHLIKKHPDNFEGEGNHLNCRICGKFHPYYAKLLNHIAIHVGEKKRAQDLVFACSVCNIIFENQTILCQHNVDNHKDMILPEEDEEDDEEEDEEVENEEQNLHQCEVCDEILEGMDLFLEHSRKHRLENDSETRISEEEESTNLTADDEPKYVDHTFSEVEDQELDHEIDPIINDENLTNSSNDKDYVESILSGDNTIVVQRTEDRNNIEQISSNNFQCKEENMENNVTVKKEIIIEDINSIVPQFVSDIKKCDEQRPCDSVVKNEINEFSSSVNDNSRDMLQVDNQHLSRNISEQGVTDLGEVLKNQTTELNLMEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -