Aaln082095.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphrophora alni
Gene Symbol
-
Assembly
GCA_963513935.1
Location
OY740776.1:50266596-50279399[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00027 0.093 15.5 0.5 1 23 225 247 225 247 0.99
2 15 2.3 7.7e+02 3.2 2.7 1 23 501 523 501 523 0.98
3 15 0.089 30 7.6 3.2 1 23 618 640 618 640 0.98
4 15 0.00058 0.19 14.5 0.7 1 23 676 698 676 698 0.98
5 15 0.064 22 8.1 3.8 1 23 704 726 704 726 0.98
6 15 6.7e-05 0.023 17.4 1.8 1 23 732 754 732 754 0.99
7 15 8e-07 0.00027 23.5 1.5 1 23 760 782 760 782 0.99
8 15 5.7e-05 0.019 17.7 3.3 1 23 788 810 788 810 0.98
9 15 0.00017 0.056 16.2 6.5 1 23 816 838 816 838 0.99
10 15 0.025 8.3 9.4 1.4 1 23 844 866 844 866 0.98
11 15 0.00082 0.28 14.0 0.1 2 23 873 894 872 894 0.97
12 15 1e-05 0.0034 20.0 2.4 1 23 900 922 900 922 0.99
13 15 2.1e-05 0.0069 19.1 0.1 1 23 928 950 928 950 0.98
14 15 3.7e-05 0.013 18.2 0.2 1 23 956 978 956 978 0.98
15 15 6.4e-05 0.021 17.5 0.5 1 23 984 1007 984 1007 0.98

Sequence Information

Coding Sequence
ATGATTAGTCATGAATTTCTTATGGCACACAGGAATCCACCACAAAGGCCATTTTGTCAAGGCCTCATTGACTGTGTTGTTTTGCGAGATGTGCGTAGAACATTTGCCCTTCCCAATTTCATTCAAGCGATATTGGAGGATAATGCTCAGATCGATGATCGGTATTGTCTTTTTTGCattgtacaaaaaataatagcTCTAACCGACAATGAATTTGATGATGATGCGATAACGGTAGTTTCAGAAAACTTTAGTGGTTGGGACAAGGAGTTCTGTACCAGCGATGGAAAACAAGAACAGAACTTTGAGAAGCAGAAATCCATTGATCACTACTACCGAAATCCTTTTTTCTCGGATGGATTTAAAGGATGGGATGACAATACTGATCATTCATCAAATTATAGAGAATGGTGTCTTAAATACAGAGatgtcGCTGAAAATTTGACCAGACCTTCAATGGTATTGGAAGTAGGGAcgaatgaaatattaaaaagtaaaacttcaCAATTGAAGGAAAGTACATCAAGTGATGTTAGAAATTATCCAGAGACAAAAGGGACAGGTTTATCTGTAGAAAATAATATGAACACGTCGGCTAATAACATTCAATACATATGCTGTAATTGTAAGAACATTTCGAGGGATAAAATCAATGCTGAAAGTGAAAAACCATTTCAATGTAATATATGTGAATATGTTGGTTTATCttctgaaaatttaaagaaacataTGAACACGCATATAAAGAGAAACTGTTCTTCAGATATAACGGAGAAAGTTATCATTGTGAAAAACATGGTATCAAAGGATGTACAATGTTCGGAAGAAATGATTTCTGACGATGTGGAACATCTTAATACGGAAACAACAGTTGGGTTGTCGAAGAATAATGTTGAAGTTTTAAACTTGTTACAAAACGTAAAATCAACGCAGactaatttacaaaatcaaattgatACAACGGTGAGTGATGGggaagaaatttgtaaaataaaaaaagttagtaAACTGAAGGCATGCGaagtatataataattgtaaggTTAAACCAAAAATGAACATTGATTCAAATAGATCAGAACATTCTAAAGAATGTTTTACTGCGGAATCGTGGAAAGATGTAGATAAGAAATTGAAACTCTTCCCTGTCGTCCTATTGGATAATATTTCTTTTGATGTacataaactgaaaaataaatattcagataaCTCggtacaaacaaaaaatgtatgcATGAAATCAATCGAGTTTGATGATCAAAATCAGAAACGGAAATTGAACTATGAAACTCATAAAGTAATGGTTGAACGTGAAAAAATGCCGAGAATTGATCAAGAATTAGATGTACCCGTAACAGGTGAGAGAAAACCCGGTCAAAGAAAGAAACTATTTAAAGACATGATTTGGTCGGAGAAAAAGAAAGTGTTGAAAGATATTAATGGAATGTGTGATTtagaagaatataataaacaaaaattgtcgctcaaaaatttgaagaaatttaaatgtaAGTTGTGCCTTTTTGTGTCTGCATCTCGCGAATGTGTAAAGGAACACAAGAAAGTTCACTTCCGTGAAATGTTTATAAACTTGAAAAGTAATTCCAAAAGATCCGCtaataaaattgtgaaacatGCGCGTGATGAAACATCTGTACGTGATAATTCAGAATCAAATATTGATACAATATTgtctgataaaaaaaagaaaaaacggATGGACAAAGACAAACGCGACATTGATGTAACAAAACCATCAAACGTAGTTGAAAGTGtagataaaaaacataataaagttaattttgacGAGTATAAAATCCCCAAATTATCGCAGTCTGAtaaaaattttttacataaatgcCTTCTGTGCGATTTTAAATCGTCGTCACATGAAACGTTAATACAACATGGTCGAGTTCACAATCGTACAAATATTACAGGTCTCAAAGACATAGTGGAAAATTCAGatgaaaaatctattaaaaaaattaagataaacaaCAAACGCGATGGAAATGAAGGGAAATATAAATGTAGGAAGTGCGGTTTGAGATTTCCAAGCGCTGCAAGTTACGACGATCATAGAAGAAACCACAGGAAACAGAGTGTTTACAAATGTGGACAATGCGATTATTCTTGTAAAACAATCGCGTCTCTAAGATTTCATCAATACACGCATTCCGGAGAAAAACCATACAAGTGTAAACTTTGTTCTTACAGCTGTCGTCGTCCTGAGAATTTAATACCTCATATGAGAGTCCATCTGGGGGACAAACCATACAAGTGTAAACTTTGTGATGACAGTTTTTCACAACTCGCTAACCTTAAAACGCATATGAGAACGCACACTGGAGAAAGACCGTACGAATGTGAAAAATGTGACTATAAATGTGCGAGGCTGTCGAATCTCAAGTACCATATGGATAAACATTCAGGAATTAAACCGTATAAGTGCAAGATATGTAATTATTCGTGTTCACGATCTTATACACTTAAAATGCATTCAAGGCGACATACCGGAGAAAGACCATACAAATGCACACTGTGTAACTATTCAGCATCGATTCTTGCTTGTCTTAATCAGCACATGTATGTTCATACAGGCGACAAGCCGTTAAAATGTACAATGTGTCCGTACAGAACTGTCTATTCCGAAGCATTAGCAGTGCATATAAGATCTCACACTGGTGAGAAAcctttcaaatgtaaatattgtgaCTACAGCACAGCGCGAAATTCAAGTCTTACAATGCATAAGCGAATACATACAGGTGAGAAGCCGTATATTTGCAGTATCTGTGGCTTTTCTACTGCACGTCTTGGAAATTTAAAAGTTCACGTGAGAAGTCATACGGGTGAAAAACCTTATCCGTGTAAAACGTGTCCAGTTAAATTTAGTACAAGATCGGCTCTCATTATACACAATAGAATTCATACAGGAGAAAGACCTTATAAGTGTATGACTTGTGGTTATGGTTTTGTTGCTTCTGCAGAGTTGAAAAAACATATAAAGAGAAAACATGAAAAGAATTTGTATATGAATGAAGCTCAAACTGAAAAAATTGAGAAAGTTGATAAAAATTAG
Protein Sequence
MISHEFLMAHRNPPQRPFCQGLIDCVVLRDVRRTFALPNFIQAILEDNAQIDDRYCLFCIVQKIIALTDNEFDDDAITVVSENFSGWDKEFCTSDGKQEQNFEKQKSIDHYYRNPFFSDGFKGWDDNTDHSSNYREWCLKYRDVAENLTRPSMVLEVGTNEILKSKTSQLKESTSSDVRNYPETKGTGLSVENNMNTSANNIQYICCNCKNISRDKINAESEKPFQCNICEYVGLSSENLKKHMNTHIKRNCSSDITEKVIIVKNMVSKDVQCSEEMISDDVEHLNTETTVGLSKNNVEVLNLLQNVKSTQTNLQNQIDTTVSDGEEICKIKKVSKLKACEVYNNCKVKPKMNIDSNRSEHSKECFTAESWKDVDKKLKLFPVVLLDNISFDVHKLKNKYSDNSVQTKNVCMKSIEFDDQNQKRKLNYETHKVMVEREKMPRIDQELDVPVTGERKPGQRKKLFKDMIWSEKKKVLKDINGMCDLEEYNKQKLSLKNLKKFKCKLCLFVSASRECVKEHKKVHFREMFINLKSNSKRSANKIVKHARDETSVRDNSESNIDTILSDKKKKKRMDKDKRDIDVTKPSNVVESVDKKHNKVNFDEYKIPKLSQSDKNFLHKCLLCDFKSSSHETLIQHGRVHNRTNITGLKDIVENSDEKSIKKIKINNKRDGNEGKYKCRKCGLRFPSAASYDDHRRNHRKQSVYKCGQCDYSCKTIASLRFHQYTHSGEKPYKCKLCSYSCRRPENLIPHMRVHLGDKPYKCKLCDDSFSQLANLKTHMRTHTGERPYECEKCDYKCARLSNLKYHMDKHSGIKPYKCKICNYSCSRSYTLKMHSRRHTGERPYKCTLCNYSASILACLNQHMYVHTGDKPLKCTMCPYRTVYSEALAVHIRSHTGEKPFKCKYCDYSTARNSSLTMHKRIHTGEKPYICSICGFSTARLGNLKVHVRSHTGEKPYPCKTCPVKFSTRSALIIHNRIHTGERPYKCMTCGYGFVASAELKKHIKRKHEKNLYMNEAQTEKIEKVDKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-