Basic Information

Insect: Aphrophora alni
Gene Symbol: -
Assembly: GCA_963513935.1
Location: OY740774.1:65952932-65969468[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 9.6e-07 0.00033 23.2 0.5 1 23 68 90 68 90 0.99

2 9 0.00054 0.18 14.6 2.2 1 23 103 125 103 125 0.98

3 9 1.8e-05 0.0061 19.2 0.1 2 23 182 204 181 204 0.94

4 9 0.00054 0.18 14.6 2.3 2 23 286 307 285 307 0.96

5 9 6.3e-07 0.00021 23.8 0.9 1 23 313 335 313 335 0.98

6 9 9.1e-06 0.0031 20.2 2.2 1 23 341 364 341 364 0.96

7 9 6.7e-08 2.3e-05 26.9 0.7 1 23 370 392 370 392 0.99

8 9 1.7e-05 0.0059 19.3 4.4 1 23 398 420 398 420 0.98

9 9 1.4e-06 0.00046 22.8 1.4 1 23 426 448 426 448 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	9.6e-07	0.00033	23.2	0.5	1	23	68	90	68	90	0.99
2	9	0.00054	0.18	14.6	2.2	1	23	103	125	103	125	0.98
3	9	1.8e-05	0.0061	19.2	0.1	2	23	182	204	181	204	0.94
4	9	0.00054	0.18	14.6	2.3	2	23	286	307	285	307	0.96
5	9	6.3e-07	0.00021	23.8	0.9	1	23	313	335	313	335	0.98
6	9	9.1e-06	0.0031	20.2	2.2	1	23	341	364	341	364	0.96
7	9	6.7e-08	2.3e-05	26.9	0.7	1	23	370	392	370	392	0.99
8	9	1.7e-05	0.0059	19.3	4.4	1	23	398	420	398	420	0.98
9	9	1.4e-06	0.00046	22.8	1.4	1	23	426	448	426	448	0.97

Sequence Information

Coding Sequence: ATGAGGTCATACCTAAATCTTTGTTTAGATATTTTGTACTTTGAAcaACAAATATCAGTGATCCAAGAAGATATAACTGGTGCAAATAAAGAGGAAGAGTTGGACTCTGATTATGGGTCATCACGTCGTAGCTTACCTCATAAAAAAAGGATTCCTAAAAAGTTAAAAGCTCCTCCCGCGAGAAATATTCATGCTAAATGTTATAAGTGCAATAAGTGTGGAGAGTCGTTTACATCTCAAGCAGCTTTTGCAACTCACAGAGCTACTCATTCTGTTCCTGCTAAGCGCTTACCTGTCGCAACTACTTTCTCTTGTGAGTTATGTAATAAACTGTTCAGTACACAGATCAAGTTTTTTGAACATCTCAAGTCACACTATGAGCCAATACAATCTTCACCACTCCCTTCTATAGAACCAGCGCCAACTGTTATATCACTTCAAAATGTTAACCCACCGCCTACAATTGAGGGTACATTTACCATTAAAACTGAAGACCTAGCATCgcAAGTTATAAAAGATGAAGTTGTGAGTACTTCCACATTACCATGCCCACAATGTGGTAAACTATTCAGAAGGCAGAAAGCTCTAGAAACACATGTAAGTGTAGCACATCCAAGTCAAGAAGATATTGAAGAGTTTAGTGAACCTGAAGACATGATGGAAGGTATTAGACATGTGGTGAACATCCAAGGGACTGATAGTGGAGAGGAAGACCATTGCGAGGATAAGTTGAGGCAATGGAGGTATGGGGAAGTACAAGAGATGGGCATGGATTTGCAAGAGATGTGTTTGGGTCTTACATCAAATAATGATTCAAACGGTGAGAAAAGTAAAACTCGGCGAAACAAACAACTATCATGTACAATATGTAGTCGTGCATTTAATCATCGTAACTCTTTGTTATATCATGAAAGATCACATTCAGGGCAGCGGCCTCACCAGTGTGAAGTTTGTGGCAAAAGTTTTTTTGCATCGAGTGCTCTTAAGGTTCACATGCGACTACATTCAGGAGACAAACCATACAAATGTGAGTTTTGTGGCCGTCATTTTCGCCAGTGGGGTGATCTTAAATATCATGTAACGTCACTACATTCAGATCAGAAACAGTTTCAGTGTGAATATTGTGGAAAGGATTTTGCTCGTAAATATTCATTGATTGTGCACAGACGAATTCATACAGGAGAGAAGAATTATCATTGTGAGTTCTGTAATAAGACATTCAGAGCATCATCCTATCTACAAAACCATAGGAGAATACATACAGGTGAAAAGCCACATCCATGTGATGTTTGTGGTAAACCTTTTCGTGTTCGTTCTGATATGAAACGCCATCGTAACACGCATACTGGTGAACGTGGAACACGAAGAACAGTTAGCTCAGCAGAAGCAAATTCTGAAGGCGAGGAAGAAGTGGCACAGCAAGTGACTGAACCTGAAACCATAATTCCAGATGCTACACCACTCAACCTGAATGTTCGCAATAGTGATTCTGATGATGGCATGACATACACTAGAGGAGAAGCAGTAGGAAGAGATGGCAATACTTTGTTTGTTTGGATACCTACACAgaatggtaatctattaatagaCGAATAA
Protein Sequence: MRSYLNLCLDILYFEQQISVIQEDITGANKEEELDSDYGSSRRSLPHKKRIPKKLKAPPARNIHAKCYKCNKCGESFTSQAAFATHRATHSVPAKRLPVATTFSCELCNKLFSTQIKFFEHLKSHYEPIQSSPLPSIEPAPTVISLQNVNPPPTIEGTFTIKTEDLASQVIKDEVVSTSTLPCPQCGKLFRRQKALETHVSVAHPSQEDIEEFSEPEDMMEGIRHVVNIQGTDSGEEDHCEDKLRQWRYGEVQEMGMDLQEMCLGLTSNNDSNGEKSKTRRNKQLSCTICSRAFNHRNSLLYHERSHSGQRPHQCEVCGKSFFASSALKVHMRLHSGDKPYKCEFCGRHFRQWGDLKYHVTSLHSDQKQFQCEYCGKDFARKYSLIVHRRIHTGEKNYHCEFCNKTFRASSYLQNHRRIHTGEKPHPCDVCGKPFRVRSDMKRHRNTHTGERGTRRTVSSAEANSEGEEEVAQQVTEPETIIPDATPLNLNVRNSDSDDGMTYTRGEAVGRDGNTLFVWIPTQNGNLLIDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -