Basic Information

Insect: Aphrophora alni
Gene Symbol: -
Assembly: GCA_963513935.1
Location: OY740768.1:52466141-52491056[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.8e-05 0.02 17.6 4.7 1 23 61 83 61 83 0.96

2 12 8.7e-05 0.03 17.1 3.7 1 23 92 114 92 114 0.97

3 12 6.1e-05 0.021 17.6 5.7 1 23 120 142 120 142 0.99

4 12 4.1e-07 0.00014 24.4 0.6 3 23 151 171 150 171 0.98

5 12 0.0013 0.45 13.4 0.9 1 23 177 199 177 199 0.98

6 12 3.1e-05 0.01 18.5 1.9 1 23 305 327 305 327 0.99

7 12 0.002 0.67 12.8 0.6 2 23 339 361 338 361 0.96

8 12 0.093 31 7.6 0.1 2 23 368 389 367 389 0.96

9 12 2.7e-05 0.009 18.7 0.2 1 23 395 417 395 417 0.98

10 12 1.7e-06 0.00056 22.5 6.8 1 23 423 445 423 445 0.99

11 12 8.8e-07 0.0003 23.4 0.8 1 23 451 473 451 473 0.98

12 12 0.0003 0.1 15.4 1.7 1 23 479 502 479 502 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.8e-05	0.02	17.6	4.7	1	23	61	83	61	83	0.96
2	12	8.7e-05	0.03	17.1	3.7	1	23	92	114	92	114	0.97
3	12	6.1e-05	0.021	17.6	5.7	1	23	120	142	120	142	0.99
4	12	4.1e-07	0.00014	24.4	0.6	3	23	151	171	150	171	0.98
5	12	0.0013	0.45	13.4	0.9	1	23	177	199	177	199	0.98
6	12	3.1e-05	0.01	18.5	1.9	1	23	305	327	305	327	0.99
7	12	0.002	0.67	12.8	0.6	2	23	339	361	338	361	0.96
8	12	0.093	31	7.6	0.1	2	23	368	389	367	389	0.96
9	12	2.7e-05	0.009	18.7	0.2	1	23	395	417	395	417	0.98
10	12	1.7e-06	0.00056	22.5	6.8	1	23	423	445	423	445	0.99
11	12	8.8e-07	0.0003	23.4	0.8	1	23	451	473	451	473	0.98
12	12	0.0003	0.1	15.4	1.7	1	23	479	502	479	502	0.94

Sequence Information

Coding Sequence: ATGTCACCTTGTAGTAACAAAACATTGCAAGAAATTAAGTTAGTGCTAGTGGAAAATGATCCAGTTGAAGAAATTAAAGAAGAGAGTCATCAAGACTTTGACGAGGTAGTGGCGGTAAAGTTAATGGAAAATAATGAAAGTAATGATGATAAAAATAAGAGTGGGAAAAAACAAGATATGTTTTTATGTGATTTATGTGGGAAGCATTTTCACCAAGCTGTCAACCTTCGAACACATAAAAGAACACATCTTGCTGATTCGCTGAAGAAAAAGCATCCTTGCTCTCTTTGTACAAAATCATTTAGATCAAAattttttttatcagaaCACATGAACATGCATAAAGGTCTCCGCCCCTACAGTTGTTCAGATTGTGATAAAAAATTCCATAAACGAATACAACTAAGACAACATCGTAAAACACATATAACAGACAACCAAAAAGTAGCATGTGAAATATGTGGTATGAAGTTTAGCAGACGTGGTAATCTTACACAACATATTAAGAGGCATGATGAAGATCGGAAATATATGTGTCGAGTTTGCAAAGAAGAATTTACTACTTTGAATATGATGTTGTCTCATAGAAGGATTCACACTCAAGAAGATATTAAGAAAAGAATGGTACAAGGAGAGAATAAAGAGCCAATCTCAAATGAAGTTTCTATAAAAGGTGGAGGATCAATCAACTCACCCTCAGCTACAGCTACATTTGCTGCACTTGTAGTTACTAGTCAGTACCTCTACCGGTTTCAACTGAGAGACTCGCCAACTTGGCCAACTCTGACCGGATATGCAACTGAACAACATACTGAGGGACAAGAACAGATGAGTACTCACTGCGATGGCATACCACGAATATTGGGCCTTTGGTCACCTGAAACTAAATACCCGAATAAAGAAGATAATGTTTACACTTGTGAAATCTGTGACAAAGTGTTATTCAAGAAGAGTTCATTTATGTATCACTTACGCACACATAAAGAACAGGCGGACATGGAAGATGAGAAATGGAAATGCAAACTATGTGGGAAACTGTTAGCTACAAGAGCATCATTAAACTATCACACTAAATCTCAACACTCGAGTGAACGTCCATGGCGTTGTCAGTTTTGCGCAGAAGGTTTCATGTTGAAGGATTTACTACTTACTCACGAACGCATTCATACGGGAGAAAAACCATTCACatgCAGTGTTTGTAGTAAAGGATTTAGAGCTCCAAACAGCTTAGCCCAGCATATGTTAATGCACacagaaaatcgtaattttcaatgTCCatattgtaacaaatgttttCATCGCAAAGGAACACTAAATGTTCATACTCGAACTCATACAGGTGAACGGCCTTTTATTTGTGATCTATGTGGACGGCCTTTTACACAGAAAAATGATATGTTAAAACACCAGAGAACTCATGGCTTGCAACCTCAATATTCATGTGAAGTTTGCAGTTTGTCTTTTAATTTCAAGAAagatttaacaaaacacaaacttttaaATCATCGAGATGATCTTGAAACAGATGTTGTGCCTTTAATATTTACATCTGACAATAATGTGTTTGGTAACATTACCCATATTATCACAGAAGATGGGAAGAAGATATTATTGTCAACAGTTCAGAGTTTTGAAGAAAACAATGTTGTACATTGA
Protein Sequence: MSPCSNKTLQEIKLVLVENDPVEEIKEESHQDFDEVVAVKLMENNESNDDKNKSGKKQDMFLCDLCGKHFHQAVNLRTHKRTHLADSLKKKHPCSLCTKSFRSKFFLSEHMNMHKGLRPYSCSDCDKKFHKRIQLRQHRKTHITDNQKVACEICGMKFSRRGNLTQHIKRHDEDRKYMCRVCKEEFTTLNMMLSHRRIHTQEDIKKRMVQGENKEPISNEVSIKGGGSINSPSATATFAALVVTSQYLYRFQLRDSPTWPTLTGYATEQHTEGQEQMSTHCDGIPRILGLWSPETKYPNKEDNVYTCEICDKVLFKKSSFMYHLRTHKEQADMEDEKWKCKLCGKLLATRASLNYHTKSQHSSERPWRCQFCAEGFMLKDLLLTHERIHTGEKPFTCSVCSKGFRAPNSLAQHMLMHTENRNFQCPYCNKCFHRKGTLNVHTRTHTGERPFICDLCGRPFTQKNDMLKHQRTHGLQPQYSCEVCSLSFNFKKDLTKHKLLNHRDDLETDVVPLIFTSDNNVFGNITHIITEDGKKILLSTVQSFEENNVVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -