Aaln052351.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740771.1:41227279-41275219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7 2.4e+03 1.6 0.2 2 16 68 82 67 84 0.72 2 13 0.047 16 8.5 0.1 1 23 356 378 356 378 0.94 3 13 2.4e-05 0.0081 18.8 1.5 1 23 386 408 386 408 0.99 4 13 0.00053 0.18 14.6 0.5 2 23 416 437 415 437 0.97 5 13 2.3e-06 0.00077 22.1 2.1 1 23 443 465 443 465 0.98 6 13 0.00051 0.17 14.7 4.0 1 23 472 494 472 494 0.98 7 13 0.00016 0.055 16.2 0.3 1 19 500 518 500 522 0.93 8 13 2.3e-05 0.0079 18.9 0.2 1 23 528 550 528 550 0.98 9 13 9.2e-07 0.00031 23.3 1.2 1 23 556 579 556 579 0.96 10 13 6.4e-05 0.022 17.5 0.6 1 23 585 608 585 608 0.95 11 13 7.6e-06 0.0026 20.4 2.8 1 23 614 636 614 636 0.99 12 13 1.4e-05 0.0049 19.5 0.5 1 23 642 664 642 664 0.97 13 13 0.00038 0.13 15.1 0.1 1 23 670 694 670 694 0.94
Sequence Information
- Coding Sequence
- ATGACTGCTGACACGGAGAAGAATTCTGTTCAAACAAAATCACCAACTTGTTTAATTTGTGATGCAAGTGTCGGTGTGTCGACAAGAAATAGTTGTCCAATATTTCATGTGAATGTGTCAACTTCAGATAAACCTGTATCTAAAATAATTGGATTTGTGCTTGGATTAGAAATTGTAGAGGATATTGTCCATAGTGTATTAgtgtgtaaaaaatgttttaaactatttaatgaaGTAGATGAGTTACAAGAAAGGCTTGCGGAAATCAGAAAGGAAGTTAATGGCAACTATCAGAGGACAATTagGAAATATGATGGTAGTGCTGTAGAAGAAGTTGATGACGATCGCCGTAAGGTGGTACATCAAAATTCTGATGTTCAAAAAGCCAGACCTCCAGGACGATCACCAGGATCAACCCGATCTCGGAAAACCAGTGTTGTACAAACATCACCTGTTAAAACTGTAGCCCCTGTAACACCGGAATGTGTTGAAATTAGACCAGATGAAAACGTACAAAAAGAAATTCAGCAAGAAATTGAAGACATAGAGCAACATGTAGTTCAACGAGAAGTACAACCTGAAGTAATAGGAACAGTAGACTTGCCATCTCAGGAACTCTGTCTTGAGCAAACgGAAATACCTGAAAATCGAGAACACACAGCTGTTCTTGTAGAAGAAGATGTTCAAGATGATATACATGGACTCGAAGACAGTGAAATAGAAGTTCATGAAGTCCGTTTCATTCAAGACATTTCAGAGTTGACGAATTTACAAGGAAATATTGCAACACTTGAAAAAGCAGCCGATGGTTCAATGCAGATTAAATTGGAAGCTCCGGATGAAGATAATATGTCAGAGAGATCTACAATGAAGAAAGGAATTGGCCGTCAGCGAAAGAGAAGGTCACAGTCTGTTAAATCGGAAATTTCTTCTTTAATTCCACAGATGGTTGTCAGTCGAGATGCAGCAATCTACACTTGCATCTTATGTCCTGTTGAGGATAAATTTATGAGTGATGCCAAAGGGATTTGTGTACACATGAAAGAATGTCATAGTTTAAGGTTGTACATCTGTGATATGTGTGGTCAagagtttttaaaaagaaatgaactGTCAGTCCATTTAGATGAGCATGTTGCTAATGAAGAAGGTGACTTTCAGTGCGAAATTTGtaatagaatattttcaaatctgAGGCTATATAGAGTTCACAAGAGAATGCATTACCCACAAGTAAAGAATTGGACCTGTGATCAGTGTGGTAAACGTTATTTGTCACGAAATATGCTAGAGGAACATATGAATACACACACAGGGATACGACCGTACAATTGTTCCAATTGTGGAAAATCGTTTGCTTCCAAATATACGTTTAAAGCACATGAGAAGACTCATCTAGAACGACCTAGGCCTTTCTCTTGTGATAAGTGTAATAAAACGTTCCTTACACACCAAAATCTTATCCAACATGAACGTACTCATTCCAGTTTACGGAACTTTGTTTGTCCTAATTGTGGAAAAGGTTTTGGCACAGCTCGTAACCTGGAAGTACACTGCGTAGTACATACAGGGTTCAAGTCATTTATATGTAGGATGTGTGGAAAAGCGTTTGCTCGCAAAGCAGAGATTAGAGATCACGAAAGAACACATACTGGTGAAAAACCTTATCAGTGTGAATTCTGCGGGGCAACATTTAGTCAGAGGAGTAACCTGCAATCACATAAAAGAGCAACACATTACGATGATAAACGTTATAAATGTATGGACTGTGGGAAAGGTTTCAAACGAAGACGTCTGTTAGATTATCATGTAAAAGCTGCCCATACTGGAGAACGACCGTACAAATGTCCAACTTGTAATGCTACATTCATATAtccagaacattttaaaaaacatcgGAGAATTCATACGGGTGAAAAACCATTCCAATGTGAGgtTTGTGGGAAAGCATTTAATAGTAGAGATAACCGTAATGCACATCGTTTTGTACACAGTGATAAAAAGCCTTACGAGTGTCTTGTCTGTGGCATGGGTTTTATGAGGAAACCTCTACTCTACAACCACATGCAAACTCAgGGCCACTTGCACGATACAATAGTGGTAAACCAACCTAGACTAACAACAGATGAAGAAATGTTAGTGCCTCAGTCTGGCACCGAGGGCATGGAAATGACATTAGTTACAGATAGTGAAGGAAACGCCAAACTATTACCTTCAGACCAAGTGGACCTTGATGGACAGGATAGTAAGATGTACATAGCTGATGGTCAGGATACGAAAATGTATATATCCGATGGACAAGATACTAAAATGTATATAGCTGATGGACAAGATACTAAAATGTACATAGCTGAACTGAAGGAACATGTTATCATTCACAAGGATAGATCGAATAGTGCTACTGTCATAGGCGACGGAGATGAGATTGTTGAAGGATCAGAATATGAAGAGGCAGTTGAACATCTTATTATTGATGGACAGGTTCATTTTGCAAATCCAAGTGCAATGGAAGCACTTGACTCTTCAGGAAATGAAATTGGCTCAGTGGCCGAGATAGCAACGACTTTAGAAGATGGACATACAATAGTAGTGCCATCATCACGTCACACCACCTACAGTGATCAACAAACCACAACTGTACAGACTGATGAAGGTCCCGTGCATCTTGTACATATTCGTATACCTTCAGAAGGTGATAATGGGCAAACTTCTTGGTTTAATATAGTACCACCATAA
- Protein Sequence
- MTADTEKNSVQTKSPTCLICDASVGVSTRNSCPIFHVNVSTSDKPVSKIIGFVLGLEIVEDIVHSVLVCKKCFKLFNEVDELQERLAEIRKEVNGNYQRTIRKYDGSAVEEVDDDRRKVVHQNSDVQKARPPGRSPGSTRSRKTSVVQTSPVKTVAPVTPECVEIRPDENVQKEIQQEIEDIEQHVVQREVQPEVIGTVDLPSQELCLEQTEIPENREHTAVLVEEDVQDDIHGLEDSEIEVHEVRFIQDISELTNLQGNIATLEKAADGSMQIKLEAPDEDNMSERSTMKKGIGRQRKRRSQSVKSEISSLIPQMVVSRDAAIYTCILCPVEDKFMSDAKGICVHMKECHSLRLYICDMCGQEFLKRNELSVHLDEHVANEEGDFQCEICNRIFSNLRLYRVHKRMHYPQVKNWTCDQCGKRYLSRNMLEEHMNTHTGIRPYNCSNCGKSFASKYTFKAHEKTHLERPRPFSCDKCNKTFLTHQNLIQHERTHSSLRNFVCPNCGKGFGTARNLEVHCVVHTGFKSFICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCMDCGKGFKRRRLLDYHVKAAHTGERPYKCPTCNATFIYPEHFKKHRRIHTGEKPFQCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQTQGHLHDTIVVNQPRLTTDEEMLVPQSGTEGMEMTLVTDSEGNAKLLPSDQVDLDGQDSKMYIADGQDTKMYISDGQDTKMYIADGQDTKMYIAELKEHVIIHKDRSNSATVIGDGDEIVEGSEYEEAVEHLIIDGQVHFANPSAMEALDSSGNEIGSVAEIATTLEDGHTIVVPSSRHTTYSDQQTTTVQTDEGPVHLVHIRIPSEGDNGQTSWFNIVPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -