Basic Information

Insect: Aphrophora alni
Gene Symbol: -
Assembly: GCA_963513935.1
Location: OY740778.1:37548365-37550299[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.088 30 7.6 7.2 1 23 38 60 38 60 0.97

2 16 1e-05 0.0035 20.0 4.0 1 23 66 88 66 88 0.98

3 16 3.9e-05 0.013 18.2 5.9 2 23 95 116 94 116 0.97

4 16 2.9e-05 0.0098 18.6 0.5 1 23 122 144 122 144 0.97

5 16 5.7e-05 0.019 17.7 1.2 1 23 150 172 150 172 0.98

6 16 1.6e-05 0.0053 19.4 1.1 1 23 178 200 178 200 0.98

7 16 0.00031 0.11 15.3 1.8 1 23 206 228 206 228 0.98

8 16 3.2e-05 0.011 18.4 4.5 1 23 234 256 234 256 0.97

9 16 0.0051 1.7 11.5 3.8 1 23 262 285 262 285 0.95

10 16 0.00012 0.041 16.6 2.5 1 23 291 313 291 313 0.97

11 16 1.6e-07 5.3e-05 25.7 0.9 1 23 319 341 319 341 0.97

12 16 0.0015 0.5 13.2 3.1 1 23 347 369 347 369 0.97

13 16 0.0023 0.78 12.6 0.9 1 23 375 397 375 397 0.98

14 16 0.077 26 7.8 6.0 1 19 403 421 403 425 0.95

15 16 0.072 24 7.9 6.1 2 23 432 453 431 453 0.96

16 16 0.00021 0.072 15.9 9.0 1 23 459 481 459 481 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.088	30	7.6	7.2	1	23	38	60	38	60	0.97
2	16	1e-05	0.0035	20.0	4.0	1	23	66	88	66	88	0.98
3	16	3.9e-05	0.013	18.2	5.9	2	23	95	116	94	116	0.97
4	16	2.9e-05	0.0098	18.6	0.5	1	23	122	144	122	144	0.97
5	16	5.7e-05	0.019	17.7	1.2	1	23	150	172	150	172	0.98
6	16	1.6e-05	0.0053	19.4	1.1	1	23	178	200	178	200	0.98
7	16	0.00031	0.11	15.3	1.8	1	23	206	228	206	228	0.98
8	16	3.2e-05	0.011	18.4	4.5	1	23	234	256	234	256	0.97
9	16	0.0051	1.7	11.5	3.8	1	23	262	285	262	285	0.95
10	16	0.00012	0.041	16.6	2.5	1	23	291	313	291	313	0.97
11	16	1.6e-07	5.3e-05	25.7	0.9	1	23	319	341	319	341	0.97
12	16	0.0015	0.5	13.2	3.1	1	23	347	369	347	369	0.97
13	16	0.0023	0.78	12.6	0.9	1	23	375	397	375	397	0.98
14	16	0.077	26	7.8	6.0	1	19	403	421	403	425	0.95
15	16	0.072	24	7.9	6.1	2	23	432	453	431	453	0.96
16	16	0.00021	0.072	15.9	9.0	1	23	459	481	459	481	0.98

Sequence Information

Coding Sequence: ATGAAGTGTGAGGATTCAGAACCAGAAGAACATGATGAGGCTGCTGATTGGCAATCATTTTTAGACAGTTGTGTACAAAATGAAATAGAGAAGAACGCTTTGAGATTCACACACTCTTGTGAGTTTTGTCAGTTTAAATGTTCAACAGCATATCGTCTCGAACAACACAAAAGAACACATTTGTTACCAAAACCATTTTCTTGCAATATATGCGGACATCAATGTTCACGTAATAGTGATTTAAGATTACACATACAGACACATACTGGGTTAAAACCAGTCAGTTGTCAGTATTGCTCTTATAGGTGTGCAACTAATTCACATTTAAAGACTCACATGAGAACACATTCGGGTGAGAAACCTTTCGCATGTACAGTTTGTGACTATAGAAGTGCTCAATCAGGTAGTTTGAAGTTACATATGAGAAAACATATGGGAGAGAAACCATTCTCGTGTGATTTGTGTCCGTATAAAGGTACGACGAGTGCACATTTAACGCAACACATGTTAACACATTCGCAAGATAAACCGTACCAATGTAATTTATGCCCGTATAAATGTACCCGTGCGGGTAGTTTAAAGCTACATATGATAATACATTCAGATGAAAAACCTTATCAGTGCGACGAATGTTCATTTAAATGTGCAAGACCGAGTAGTTTACGACTTCATAAATTAGTACATACGGGAGAAAAGCCGTACGTGTGTAATCACTGTCCATATAGGTGTACGTCCGCTAGTCATTTGAAGGATCATATGGTGATACATTCAGATAGTAAACCTTTTGAATGTAATGATTGTGCATATCGTTGTTcttcaaaaaaactattaaaacaacaTACTTTTAGAGCACATTCTGGTGTAAAAccgtttttttgtaaaatctgcCCGTACAGGTGTGCTGGGTCTTATTCACTTAAACTACACATGAGAATGCACAATGGAGAACGACCTTTCGCTTGTAACCATTGTCCAAAAACGTTTCCAAGAGCTGGTGATTTAAAACTACACATGAGAAATCATTCTGGAGAAAAACCATTCGCGTGCGATCAGTGTTCGTTTAAATGTACGCACGCTGGTAATTTAAGAAATCACTTATTGATACATTCGGGAATTAAACCATTTCAGTGTAACGTTTGTCCTTATAAAAGTGCGCATCCAAGTATTTTAAAAATGCACATGTTGAAGCATTCTGACGAAAAACCTTTTAGTTGTAGATATTGCCCTTATAAGTGTAAAACAAAAGCTTTATTGAAACATCACTCATGGCGACACACAGACGATAAACCTATATCTTGTAaactatgtaaatataaatgtcaTGTCGCGTATCATTTGAAAATACATATGTTGTCGCATTCCGAAGAAAAACCGTTCAGTTGTACAATATGTCCTCATAAGTGTAAAACAAACAGTCATttgaaacaacatttaaaaactcatttgaaGAACGGCGATTTCGTTAAGGTTAATGGCTCAAATGATGGTCAACGTTCAAACAATCAGTTGAATAGAATTAAGGAAGAAAGTGACGGGAGTTGGAGTGGTGCTGAAGATAATAAATCTAAAGCTAGAAATGTTAGAAAAACAAAACGTAAGGTTAAACGTGTTAAAAATAAACGTgggaatattaaaaatttagaatgtttGCAAAATAGTCGGAGTGTCGAGGATGTTAAAGAAGAACAGAGTTCGAGTGATAAAGAAGAACATTTGAATGATGTTGGAAACAATAGGGATTGTGACAGTCAAAGTGGGAATGATGTAAAAGAACAGATTTCAGATGTTacagaaaaacatttaaataagattcaaaacaataaaagttCAAATACAGATGATCAAAGTTCCGATGATAACCAGATCAAAACAAGTTCAAATCATAGTTCAAATAATACTCAAAGTTCAAAAGATGTTGATAAAATTATCGAGTAG
Protein Sequence: MKCEDSEPEEHDEAADWQSFLDSCVQNEIEKNALRFTHSCEFCQFKCSTAYRLEQHKRTHLLPKPFSCNICGHQCSRNSDLRLHIQTHTGLKPVSCQYCSYRCATNSHLKTHMRTHSGEKPFACTVCDYRSAQSGSLKLHMRKHMGEKPFSCDLCPYKGTTSAHLTQHMLTHSQDKPYQCNLCPYKCTRAGSLKLHMIIHSDEKPYQCDECSFKCARPSSLRLHKLVHTGEKPYVCNHCPYRCTSASHLKDHMVIHSDSKPFECNDCAYRCSSKKLLKQHTFRAHSGVKPFFCKICPYRCAGSYSLKLHMRMHNGERPFACNHCPKTFPRAGDLKLHMRNHSGEKPFACDQCSFKCTHAGNLRNHLLIHSGIKPFQCNVCPYKSAHPSILKMHMLKHSDEKPFSCRYCPYKCKTKALLKHHSWRHTDDKPISCKLCKYKCHVAYHLKIHMLSHSEEKPFSCTICPHKCKTNSHLKQHLKTHLKNGDFVKVNGSNDGQRSNNQLNRIKEESDGSWSGAEDNKSKARNVRKTKRKVKRVKNKRGNIKNLECLQNSRSVEDVKEEQSSSDKEEHLNDVGNNRDCDSQSGNDVKEQISDVTEKHLNKIQNNKSSNTDDQSSDDNQIKTSSNHSSNNTQSSKDVDKIIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00139986;
90% Identity: iTF_00139986;
80% Identity: iTF_00139986;