Basic Information

Insect: Aphrophora alni
Gene Symbol: -
Assembly: GCA_963513935.1
Location: OY740768.1:46788747-46795581[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.6 5.3e+02 3.7 0.1 1 21 438 458 438 460 0.85

2 18 0.0063 2.1 11.2 0.1 1 23 466 488 466 488 0.94

3 18 0.00073 0.25 14.2 0.6 1 21 503 523 503 524 0.95

4 18 0.17 58 6.7 4.8 2 23 532 553 532 553 0.93

5 18 0.00064 0.22 14.4 0.4 2 23 560 582 560 582 0.94

6 18 8.7e-06 0.0029 20.2 4.6 1 23 588 610 588 610 0.96

7 18 1e-06 0.00035 23.1 1.5 1 23 619 642 619 642 0.94

8 18 0.07 24 7.9 0.2 1 23 652 675 652 675 0.96

9 18 0.00032 0.11 15.3 4.6 1 23 696 718 696 718 0.96

10 18 0.19 65 6.6 0.4 1 20 724 743 724 746 0.94

11 18 0.093 31 7.6 2.1 1 23 765 787 765 787 0.96

12 18 0.0048 1.6 11.6 2.1 1 23 793 815 793 815 0.98

13 18 1.2e-05 0.004 19.8 0.5 1 23 831 853 831 853 0.99

14 18 1.5e-06 0.00049 22.7 0.5 1 23 859 881 859 881 0.98

15 18 0.00069 0.23 14.3 0.3 1 23 887 909 887 909 0.98

16 18 0.00088 0.3 13.9 3.4 1 23 915 937 915 937 0.98

17 18 8.8e-06 0.003 20.2 0.9 1 23 943 965 943 965 0.99

18 18 1.7e-05 0.0057 19.3 0.6 2 23 972 994 972 994 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.6	5.3e+02	3.7	0.1	1	21	438	458	438	460	0.85
2	18	0.0063	2.1	11.2	0.1	1	23	466	488	466	488	0.94
3	18	0.00073	0.25	14.2	0.6	1	21	503	523	503	524	0.95
4	18	0.17	58	6.7	4.8	2	23	532	553	532	553	0.93
5	18	0.00064	0.22	14.4	0.4	2	23	560	582	560	582	0.94
6	18	8.7e-06	0.0029	20.2	4.6	1	23	588	610	588	610	0.96
7	18	1e-06	0.00035	23.1	1.5	1	23	619	642	619	642	0.94
8	18	0.07	24	7.9	0.2	1	23	652	675	652	675	0.96
9	18	0.00032	0.11	15.3	4.6	1	23	696	718	696	718	0.96
10	18	0.19	65	6.6	0.4	1	20	724	743	724	746	0.94
11	18	0.093	31	7.6	2.1	1	23	765	787	765	787	0.96
12	18	0.0048	1.6	11.6	2.1	1	23	793	815	793	815	0.98
13	18	1.2e-05	0.004	19.8	0.5	1	23	831	853	831	853	0.99
14	18	1.5e-06	0.00049	22.7	0.5	1	23	859	881	859	881	0.98
15	18	0.00069	0.23	14.3	0.3	1	23	887	909	887	909	0.98
16	18	0.00088	0.3	13.9	3.4	1	23	915	937	915	937	0.98
17	18	8.8e-06	0.003	20.2	0.9	1	23	943	965	943	965	0.99
18	18	1.7e-05	0.0057	19.3	0.6	2	23	972	994	972	994	0.96

Sequence Information

Coding Sequence: ATGGAATATAGTTTCTACGTCTCTTCAGTCAGTAACTCGAGCATGGAGACTGAGCTTCTGGCCATCCTTGCTGCTCTCCAACACTGTGACGATTTATCCAAGGAACAGATTTGCATTCTCACAGACTCCAGGGCAGCCCTCTTTACAATAAACAGGTATAAACCATCTCCCTACTTTCATTATACACATGCAATACACAGTCAGCTCcagaatatacaaaaacataaaaccatttACTTCCAATGGATCCCTGGGCACAGTGACATACAAGGTAATGAGGAGGCCGACAAAATAGCAAGAACTGCTCTTCAGCAACATCTAAAGCCACTACATGTACCGATTCTAACTACTAGCATTCAGGAAGCGAAACGCTTTCTCAAACTGAAATGGATCGACATGTGGAAGAATGATACAACCGGCAGAGGACTGTTCAAACTGCTGAAATGGCCAAACGATTTGGAGATATACAGGAACCACAATAGGCAGACACAAACTTTCATCTCCCGATCCAGAACTGGACACATCATCACTGAGGAATACCTGTACCATTTTGGTATGATAGACTCACCTCTGTGCACTAGATGTGGACAGAGGAGCGAGAGTCTGGAGCATGTGGTCCTTGAGTGTACCCATGGTGATGGAGCAGTCAGAGAGGAAAtactgagacatcttcaggttggcAATGCCACACGGGATTTTATGTCATCCATACTCACTTCCACGAAACTTGTGCAACATGCTGCCCATCTGTATAGAAGACATCGTGCAGTCGGCACAGAGGCTGGATGCATGTACACAAAGCCTATTGAAAATGGTCATCCTGTAGAAGCTTCAACATTCCATAGCAACAGCATAGAAAGTGATTCTAATGAAAGTACCTTGGTTCAGCTGAACAGCTCAAATAAACCAAGTTACTGTTGTCCACTGTGTTCATGTGGACAGATGTTTTCAAAAAGTGGAATCTATAGAGCTAACACTGTTAAGCCAACCAATACTGAGAATGTGTCTGAGTGTGATGAACCCATAGAAGAGTCAGATTCGCTAAACGATATTATATCTGTAGCTGATGAAGATGAAGAAACAGTTGCTCAAGACTCGACTAGTAATGATGGAAGGGATCTTTGGAATGGACAAGATTATGGATTAAAAATTCCCGAGTTGGATATGGATAGTTTGTATGCAGATCCGGAAGGAATAGTAGGAATGGAGCTAGATTCAATAGAAGAAGAAAACTGGAATGAAGGAGACGAAGAAGGAGAAGATGATATGGAAGATGTTAAACCAATCATCAAGGGAGAACAAGAATTCGAATTTGCTTGCCGAATATGTGGCCTAGAGTTCTTAGATTTGACATCTTTATTAGATCATTCAGACGCCCATTCTGATATTGATTATTATCCTTGTACTATGTGTGACTTGTTTTACTCTGGGAAAGCTGATCTTGAAGTTCATTTTCTGGATCATCAGATGCCCAATGAAAAATCTAGTCAAGAATCTTCTCAATATTATCAATGTGAATCGTGTGGAATTCCTTTCAAATCGTTGACAAAGTTACAGAATCATCTTTGTGGAGCTATGAACACAACATCTAACCGTTGTTTTCACTGTAATAAGTCGTTCCGTTCTGAAGCAAGATTACTGTTTCATCAACGATTTCATCAAGGTGCTAAACCAGGATATTGTGATATTTGTCAGAAAACGTTTCCAGATGAAgttaagttatataaacatacaatGTATCTTCATTCGCAAAATAAAGGACACTGTTGTGAAGAATGTGGAAAGGTTTTTAGGTCTGTTAGTTCTTTGCGATATCACCAGCGGTCTCACCAGGGTGAAGATATCATGAAGCCTTACCCTTGTGAACAGTGTGgaaaatgttttattcgtaaaAGTATGTTGCGAAATCACTTGCTGGCAACTCATAAAAATTTAAGCCAACAAGGCGCGTGCTATACTTGTAAATTGTGTATGGAAGCTTTCCCTACCACAGATCATGCAGTAGCACATATGGATATACAACATATACAAGAATGTAGTGGTGAGACTAGTTACAGTTTTGAAATGCATACTGTCACACGATTGTATATATGTGAGTATTGTGAACGATGTTTCACCGATCCTTTACATCTAAACGCTCATAGAGAACACCACTCCCCTGATTTGCCTTTTCAGTGTAAACTATGCGGTGACTTGTTTCCAAATTATTCATCTTTGGATCAGCATCGTCCGGAACATTATGGGGCTAAAGGAAATCAAGATTACGCTAGCGATTTTACAGTTCCAACAGTTTATATGTGTGAATATTGTGAGCGTTGTTTCCTAAACTATATTAAACTATCTGAACATCTCACCGTTCATTACGGGGAAGATCCGTATCAGTGTCGTTTCTGTGATCAGAGGTTTAAATCGTTCTCGGAAGTTTCTGAGCATCGAGTTACACATGATCAGTCTGTTGCACCCATTGATGATTTTGATTTCTATCGTCCATATGAGTGTCACTATTGTAGAAAAGCGTTTGCTATTGAAGATGCTTTAGTCAAACACATACGtatgcatactggagaaaaacctttcATATGTGATCAATGTGGAAAAGGATTTTCCCAAAGTTCTGGCTTGTACACTCATCAGAAAGTGCACTCAGATGAGCGTCCATATACATGCCCAGTTTGTCCTCGtacttttaaaatcaaaggaGATCGAGATGTCCATGTGCGTAAACATTCCGGTGATCGTCCTTACAAATGTGACTTTTGTGGAAAAGCCTTTATGACCCAACATGTGTACAGTCAACATCGTAAAATACACACTGGAGAACGTCCTTATAAGTGTGATGTGTGTGGTATAGCATTTCGACGATCTCATGTGCTTACTGTTCACAAACGGATTCATACTGGTGAAAAACCTAATGTATGTGATATTTGTGGGAAACGTTATCGTCAAAAAGGAGATATGTTGAAACATCGTAGAATACAACATGGAATAGTGAAAGTTAAAATACAGAGATGTGACTATTAA
Protein Sequence: MEYSFYVSSVSNSSMETELLAILAALQHCDDLSKEQICILTDSRAALFTINRYKPSPYFHYTHAIHSQLQNIQKHKTIYFQWIPGHSDIQGNEEADKIARTALQQHLKPLHVPILTTSIQEAKRFLKLKWIDMWKNDTTGRGLFKLLKWPNDLEIYRNHNRQTQTFISRSRTGHIITEEYLYHFGMIDSPLCTRCGQRSESLEHVVLECTHGDGAVREEILRHLQVGNATRDFMSSILTSTKLVQHAAHLYRRHRAVGTEAGCMYTKPIENGHPVEASTFHSNSIESDSNESTLVQLNSSNKPSYCCPLCSCGQMFSKSGIYRANTVKPTNTENVSECDEPIEESDSLNDIISVADEDEETVAQDSTSNDGRDLWNGQDYGLKIPELDMDSLYADPEGIVGMELDSIEEENWNEGDEEGEDDMEDVKPIIKGEQEFEFACRICGLEFLDLTSLLDHSDAHSDIDYYPCTMCDLFYSGKADLEVHFLDHQMPNEKSSQESSQYYQCESCGIPFKSLTKLQNHLCGAMNTTSNRCFHCNKSFRSEARLLFHQRFHQGAKPGYCDICQKTFPDEVKLYKHTMYLHSQNKGHCCEECGKVFRSVSSLRYHQRSHQGEDIMKPYPCEQCGKCFIRKSMLRNHLLATHKNLSQQGACYTCKLCMEAFPTTDHAVAHMDIQHIQECSGETSYSFEMHTVTRLYICEYCERCFTDPLHLNAHREHHSPDLPFQCKLCGDLFPNYSSLDQHRPEHYGAKGNQDYASDFTVPTVYMCEYCERCFLNYIKLSEHLTVHYGEDPYQCRFCDQRFKSFSEVSEHRVTHDQSVAPIDDFDFYRPYECHYCRKAFAIEDALVKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSDERPYTCPVCPRTFKIKGDRDVHVRKHSGDRPYKCDFCGKAFMTQHVYSQHRKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNVCDICGKRYRQKGDMLKHRRIQHGIVKVKIQRCDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -