Basic Information

Insect: Aphrophora alni
Gene Symbol: -
Assembly: GCA_963513935.1
Location: OY740777.1:24584825-24586453[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 6.9e-07 0.00023 23.7 1.0 1 23 10 32 10 32 0.99

2 19 1.3e-05 0.0046 19.6 0.6 1 23 38 60 38 60 0.99

3 19 9.6e-05 0.032 17.0 0.1 1 23 66 88 66 88 0.99

4 19 0.00012 0.042 16.6 3.1 1 23 94 116 94 116 0.99

5 19 0.0008 0.27 14.1 0.6 2 23 123 144 122 144 0.98

6 19 0.00064 0.22 14.4 0.6 1 23 150 172 150 172 0.98

7 19 0.00018 0.06 16.1 0.5 1 23 178 200 178 200 0.98

8 19 1.2e-06 0.0004 23.0 0.1 1 23 206 228 206 228 0.99

9 19 2.4e-05 0.008 18.9 0.2 1 23 234 256 234 256 0.99

10 19 1.3e-05 0.0044 19.7 3.0 1 23 262 284 262 284 0.99

11 19 0.00049 0.17 14.7 1.6 2 23 291 312 290 312 0.98

12 19 0.02 6.6 9.7 2.7 1 23 318 340 318 340 0.98

13 19 0.072 24 7.9 6.1 1 23 346 368 346 368 0.98

14 19 0.014 4.7 10.2 0.4 1 23 374 396 374 396 0.98

15 19 8.4e-06 0.0029 20.3 0.4 2 23 403 424 402 424 0.98

16 19 0.0061 2 11.3 0.9 1 23 430 452 430 452 0.98

17 19 2.9e-06 0.00097 21.8 0.7 2 23 459 480 458 480 0.98

18 19 8.4e-06 0.0028 20.3 0.6 1 23 486 508 486 508 0.99

19 19 8.1e-05 0.027 17.2 1.0 1 23 514 536 514 537 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	6.9e-07	0.00023	23.7	1.0	1	23	10	32	10	32	0.99
2	19	1.3e-05	0.0046	19.6	0.6	1	23	38	60	38	60	0.99
3	19	9.6e-05	0.032	17.0	0.1	1	23	66	88	66	88	0.99
4	19	0.00012	0.042	16.6	3.1	1	23	94	116	94	116	0.99
5	19	0.0008	0.27	14.1	0.6	2	23	123	144	122	144	0.98
6	19	0.00064	0.22	14.4	0.6	1	23	150	172	150	172	0.98
7	19	0.00018	0.06	16.1	0.5	1	23	178	200	178	200	0.98
8	19	1.2e-06	0.0004	23.0	0.1	1	23	206	228	206	228	0.99
9	19	2.4e-05	0.008	18.9	0.2	1	23	234	256	234	256	0.99
10	19	1.3e-05	0.0044	19.7	3.0	1	23	262	284	262	284	0.99
11	19	0.00049	0.17	14.7	1.6	2	23	291	312	290	312	0.98
12	19	0.02	6.6	9.7	2.7	1	23	318	340	318	340	0.98
13	19	0.072	24	7.9	6.1	1	23	346	368	346	368	0.98
14	19	0.014	4.7	10.2	0.4	1	23	374	396	374	396	0.98
15	19	8.4e-06	0.0029	20.3	0.4	2	23	403	424	402	424	0.98
16	19	0.0061	2	11.3	0.9	1	23	430	452	430	452	0.98
17	19	2.9e-06	0.00097	21.8	0.7	2	23	459	480	458	480	0.98
18	19	8.4e-06	0.0028	20.3	0.6	1	23	486	508	486	508	0.99
19	19	8.1e-05	0.027	17.2	1.0	1	23	514	536	514	537	0.96

Sequence Information

Coding Sequence: ATGAAACTTCGTACAAAAGAAAAGGCATATAAATGCACTCATTGCGATTATGCTGCTATAACACCCTCACAACTTAAAAatcacatgagagtgcatacagGAGAAAAGCCATATAAGTGTGAACATTGTGATTATTCAGGCCCAAGACTAGATGGTCTTAAAATTCACATGAGATTACATACAGGAGAAAAACCTTACAAATGCACTCAATGCGATTATTCCGCTATAGTACCTTCCCAAGTTAAAATTCATATGAGAATCCATACAGGAGAAAAACCTTACAAGTGCACAATATGTGATTACTGTGCTAGTTCACGAAATAGTGTTAATAAACACATGATGAGGCATACAGGAGAAAAACCAAACAAATGCACAATATGTGATTTTTCTACTATTGGTAAAACACGACTTATTAaccacatgagagtgcatacagGAGAAAACCTATACAGATGCAAACAATGTGATTATTATGCTCCAAAGCAAGATGATCTTAGAAGTCACATGATACAGCATAAAGGAGAACACAAATACAGGTGCACACAATGTGATTATTCTGCCCCAGTAAAAGGTTATCTAACACGTCACATGGTAAAGCATTCAGGGGAAAAGCCATACAAATGTGCAGAGTGTGATTATTCTGCCCCAAGACCAGATAATCTTAAAAttcacatgagagtgcatacagGAGAAAAGCCCTACAAATGCACTCTATGTGATTATTCTGCTACAATACCTTCATTACTTAAAATTCACATGAGAATTCATTCAGGAGAAAGACCATACAAATGTACAGTGTGTGATTATTCTGCCAGAACACGAAATCATCTTAAAATTCACATGATGAGACATACAGGAGAAAAACCAAACAAATGCACACTATGTGATTATTCTACTAAAGGGAAAACACGTCTTATGAatcacatgagagtgcatacagGAGAAAACCTATACAGATGTAAACAATGTTATTATTCTACTCTAAGTCAAGATGATCTTAAAAATCACTTGACAAAGCATAAAGGAGACCAACCATACAGATGTACAGAATGTGATTATACTACTTTAATAAGTCATCACTTTAAACGTCACATGATAAAGCATACAGGAGAAAGGCTATATAAATGTACGCAATGTGATTATTCTGCCCTAAGCTTAGATAGtcttaaaattcatttaataaagCATACAGGAGAAAAACCAAACAAATGCACTGAATGTGATTATTCTGCTATAACACAAGGTAATCTTCAACGCCATATGATAAAGCATACAGGAGAAAGgctatataaatgtaaacaatgtgattattctgcattaagattaaataatcttaaaattcatttaataaagCATACAGGAGAAAAACCAAACAAATGTACTGAATGTGATTATTCTGCTACAACACAAGGTAATCTTCAACGTCACATGATAAAGCATAACAAAGGAAAGTCATACAAATGTACAGAATGTGATTATACGTCTATAGCACGAGGTAATCTTACAAAACACATGAAAGTGCATACAGGAGAAAAACCGTACAAATGCACAGAATGTGAGTATTCTGCTATAGAAAAAACTAACCTTAAAAGACACATAATCGTGCATCACACACAAAGAATCATATAA
Protein Sequence: MKLRTKEKAYKCTHCDYAAITPSQLKNHMRVHTGEKPYKCEHCDYSGPRLDGLKIHMRLHTGEKPYKCTQCDYSAIVPSQVKIHMRIHTGEKPYKCTICDYCASSRNSVNKHMMRHTGEKPNKCTICDFSTIGKTRLINHMRVHTGENLYRCKQCDYYAPKQDDLRSHMIQHKGEHKYRCTQCDYSAPVKGYLTRHMVKHSGEKPYKCAECDYSAPRPDNLKIHMRVHTGEKPYKCTLCDYSATIPSLLKIHMRIHSGERPYKCTVCDYSARTRNHLKIHMMRHTGEKPNKCTLCDYSTKGKTRLMNHMRVHTGENLYRCKQCYYSTLSQDDLKNHLTKHKGDQPYRCTECDYTTLISHHFKRHMIKHTGERLYKCTQCDYSALSLDSLKIHLIKHTGEKPNKCTECDYSAITQGNLQRHMIKHTGERLYKCKQCDYSALRLNNLKIHLIKHTGEKPNKCTECDYSATTQGNLQRHMIKHNKGKSYKCTECDYTSIARGNLTKHMKVHTGEKPYKCTECEYSAIEKTNLKRHIIVHHTQRII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -