Aaln073600.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740774.1:67747330-67762170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00012 0.041 16.6 0.3 3 23 132 153 130 153 0.96 2 20 2e-06 0.00066 22.3 1.3 2 23 158 179 157 179 0.96 3 20 4.2e-06 0.0014 21.2 0.3 3 23 189 209 188 209 0.97 4 20 6.7e-05 0.022 17.5 0.5 1 23 213 235 213 235 0.99 5 20 0.26 88 6.1 0.3 2 13 241 252 240 256 0.84 6 20 4.3e-05 0.015 18.0 0.4 1 23 261 283 261 283 0.97 7 20 4.8e-07 0.00016 24.2 2.1 1 23 288 310 288 310 0.93 8 20 2.4e-07 8e-05 25.2 0.6 1 23 316 338 316 338 0.98 9 20 4.6e-05 0.016 18.0 3.0 1 23 344 366 344 366 0.94 10 20 2.1e-05 0.007 19.0 0.8 1 23 372 394 372 394 0.94 11 20 1.1e-06 0.00037 23.1 0.5 1 23 400 422 400 422 0.96 12 20 4.7e-08 1.6e-05 27.4 0.3 1 23 428 450 428 450 0.98 13 20 9.9e-08 3.3e-05 26.3 0.3 1 23 456 478 456 478 0.98 14 20 5.9e-07 0.0002 23.9 0.2 1 23 484 506 484 506 0.97 15 20 0.0022 0.73 12.7 0.6 1 23 516 538 516 538 0.97 16 20 0.00012 0.039 16.7 0.9 1 23 557 579 557 579 0.98 17 20 8.8e-07 0.0003 23.4 1.0 1 23 585 607 585 607 0.99 18 20 4.3e-06 0.0015 21.2 3.9 1 20 613 632 613 635 0.94 19 20 1.5e-05 0.0052 19.5 0.9 1 23 641 663 641 663 0.98 20 20 4.4e-05 0.015 18.0 0.8 2 23 670 691 669 691 0.96
Sequence Information
- Coding Sequence
- ATGGAGGATTCAGACACTGAGCAAAAAAACAATGATATTAAGAAAGAAGAAGACGTTACCGAAGATTCCTCAGCTACATCAAGAGATTCATTATTATTAACgcCAGATGTAATTGCTGCATCAAGCTTCTCACTTTCATCCCTTCagCTTAATCAAGAAGAAGCTCTTCGAGGCGTCAGTTTTGAAGCATTGAGTCATATAATGTCATCAACATGTCAAGTAGGTAGTGGGCAGTTTGAAATGGTTTCTACTACCTTTAACCAACCTCCTGATTATCATAATTCTCCCTCTTCTCTCGATACTTTCACTACACCCGGAGAGAAAACTGAAGAACCAATTGCTGAAGCAGTTTATTCAGATGAAGATGACCGAAGCAATGACATTGGAGTAATGTGTTCTGCTTGCAAGATGAGCTTTTCCAACTCAGCTGAACTACTAAACCATAGAAGAACAGTACACCGTGGCCAAATCAGCTGTGAATATTGTGGGAAGAATTTCGCCAACAGTCATAACTTGAAAATTCATTTGTATTCCCACACAGGTGATAatagaataaaatcattttgtggAACATGTGGCAAAGGTTTTGTAAAACCATCAGATCTGCGTCGTCATCAGTTGATTCATAAAGGTCGCTACACTTGCTTGGAgtgtaatttaacatttaacaatgcAGACGAAGTGAAGGAACATACTAAAACACATACAGAGTTACAAGATTCTTGCAGTGATTGTAACAAAGAGTTTACTGAACCAAAGTTGAATCAGGATAAGGAACTATTTCCTTGTGATACTTGTGGCTTAAGTTTTGAAAGCAAGTTTGATTTGAAAGCTCATTCTTTGAAACATACAGTTAATTTACATTGTTGTAATGTCTGTGGCAAATCTTTCAGTCGACCATCTGATTTAAACCGCCATGCTGTAATTCATACCGGAGAAAGACCGTACGCATGTACCATCTGTGAAATGAGTTTTACTAATTCCAGCAATCTACGTATGCATCTTATGACACATTCTGATACAAAACCCCATCCTTGTGGTATGTGTGATAAATCTTTTCGTAGAATTTCAGACCTTGAACGACATTCTTGTTTGCATAGCGGTGCCAGACCTTTTTTATGTACCTTATGTGGTATGGCGTTCACaacaagttataatttaaaaatacattcctTAAAACATTCAGGTGGTCTACCATATCCTTGTACACAATGTGAAAAATCTTTTAGTAAACCTTCAGAACTGCAAAGGCATAGTTTAATACATTCTGGAGAAAGACCATTTACATGCCCTCAGTGCGGTATGGCATTTTCTAACTCTAGCAACCTCCGAAATCACGTTATAACACATTCAGGTCGAAGGCCATATCCATGTAGCATTTGCAAGAAAGCATTTACTAGACCTTCTGATGTTAAAAGACATATTCTTACACATACAGGAGCTCGGCCATTTGCATGCCAAGTTTGTGGACTAGCTTTTGCTGAttcatctaatttaaaaaaacatactttaactCATTCCAAACATATAACATCACCACAGACATTTTCATGCAGTTTATGTGAAATATCTTGCAACAGTAATGAAGAATTAGAATCTCATCTTGTCAGTCATGGTACAGACGGAGAGTTACAGaaagattttatgaataaaattaacgGTAAACATTATACGTGTGCAATTTGTGGTGTTCGGTTTGTTCATGCTATTCACCTACAGGAACATTCCTTAACACATGATAGGGAACATTCATTCCAGTGTGAAATTTGTGACAAGTCATTTTCTCAAGAGTTATTTCTTCAACGACATTTGTTGACTCATACAGAGGCAAGACCATATGAATGTCCTGagtgttttaaatgtttcaaaagttCATCTCATTTAAAAAACCATATACCAATACATTCCGGTGTTAAACCATATTCTTGTGAGATTTGtaataaatcttttttgaaaaatgcttCGTTAAGAAGGCACCAAGCGACGCATGCTAGAGGGCACCCTGTACCTTGTACTATATGTGGAAAAGCTTTCCATAACATGgaatatttaaagaaacataCTGTTACACATGTTGATTCATAA
- Protein Sequence
- MEDSDTEQKNNDIKKEEDVTEDSSATSRDSLLLTPDVIAASSFSLSSLQLNQEEALRGVSFEALSHIMSSTCQVGSGQFEMVSTTFNQPPDYHNSPSSLDTFTTPGEKTEEPIAEAVYSDEDDRSNDIGVMCSACKMSFSNSAELLNHRRTVHRGQISCEYCGKNFANSHNLKIHLYSHTGDNRIKSFCGTCGKGFVKPSDLRRHQLIHKGRYTCLECNLTFNNADEVKEHTKTHTELQDSCSDCNKEFTEPKLNQDKELFPCDTCGLSFESKFDLKAHSLKHTVNLHCCNVCGKSFSRPSDLNRHAVIHTGERPYACTICEMSFTNSSNLRMHLMTHSDTKPHPCGMCDKSFRRISDLERHSCLHSGARPFLCTLCGMAFTTSYNLKIHSLKHSGGLPYPCTQCEKSFSKPSELQRHSLIHSGERPFTCPQCGMAFSNSSNLRNHVITHSGRRPYPCSICKKAFTRPSDVKRHILTHTGARPFACQVCGLAFADSSNLKKHTLTHSKHITSPQTFSCSLCEISCNSNEELESHLVSHGTDGELQKDFMNKINGKHYTCAICGVRFVHAIHLQEHSLTHDREHSFQCEICDKSFSQELFLQRHLLTHTEARPYECPECFKCFKSSSHLKNHIPIHSGVKPYSCEICNKSFLKNASLRRHQATHARGHPVPCTICGKAFHNMEYLKKHTVTHVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -