Aaln075299.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740775.1:5003260-5006120[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.022 25 7.3 0.3 9 43 75 116 72 117 0.80 2 7 0.56 6.2e+02 2.8 0.0 12 42 196 230 191 233 0.83 3 7 3.7 4.1e+03 0.2 0.1 7 21 227 241 220 256 0.73 4 7 0.38 4.3e+02 3.4 0.0 17 34 306 323 296 337 0.83 5 7 0.00078 0.87 12.0 0.1 14 40 380 410 373 415 0.80 6 7 0.011 12 8.3 0.2 17 43 486 517 478 518 0.85 7 7 0.25 2.8e+02 3.9 0.2 15 27 578 590 567 596 0.84
Sequence Information
- Coding Sequence
- ATGATTCATAAGCAAAACGAATTTTCCCTTGCCAAGAATGTTGTTGAACAGTTTACAAAGCCAGCTGAAAATAGAACTCAGTCTAGTAATGTTAATATGACTTCAGTTCCATTATTGAACAATCAAATGGACTCTTCAAGCGACACCTCGACGGACCTTTCCAGCTTAAAAAGAATATTGAAGCCTTATGCCATTCcacaaattattgaacaaaacGCACAGTTCTTAATACAACAAGAGAACCATTTTAAATGTATGTTGTGTAATGTACAACTCATGGTTTTATCTGATCCTCTAAAAACTATACTCCAGTTTATTCAACATTTAGAAAGCAATATTCATAAGCATAAGAAAATCACCCGTTCCAAGATTGGAGAACAACCCATAAAAGCAACTGAAAATAAAACTCAGTCTAGCAATATTAATGTGCCTTCAAATCCATTATTAAACAATGAAATCGACTCTTCAAGCAACTCGTCGCGAGACACTTCAAGCAACTTGTCGCGAGACTTTTCAAGcttaaaagaaatattgaaacCTTGTCCCGTTCcacaaattattgaacaaaacaaacaatttataatcaaacaaaatgacCACTTTAAATGTATTATGTGCGATGTACAACTCACAGTTTTATCTGATCCTCCCAAAACTATATATCAGTTTACTCAACATTTACAAAGCAAGATTCATAAGAAGAACAAAATCACCTGCGGCATTACAGTAAAGATTGCTGAACAATCTACAAAGGCAGCTGAAAATATATCTAGGTCTAGTAGTCTTAAAATGCCTTCAAatccattattaaaaaatgaaatggatTTTTTGAGTTTGAAAGCAATTCAGAGTCCTCATCCTATTCcacaaattattgaacaaaacaaggattatataattaaattaaacgaACATTTCAAATGCCTCTTGTGTGATAGAATCTTGCAGATCTCAAAAGATGTTTCCAATAGCATGGCAGATTTTGTTTCACATTTCATGGGTGCTAACcacaaaagaaaaaagaatacTCATATTAAGACAATGGAAAATATAACTGTACAGTTAGAGAAAACGCAACACACTACCTCAGTTTTACCTGCCTCAAAGCCTTCTTTATGGTATCCTAATGGTGATAccgatatttttgttaaatgcaATATATGTAATGTACAAATTAGTGTTTCATCAGATGGTTCAGTCACTAACTATCAAATATCTCAACATTTGCAAGGTAAAAACCACAAGCAAAAAGAAAGAGCTCTTTCTATGAAACAGAATGTTCAAGTTAATTCAAAGGAAACCTCAACTCTACCTGAAAGTAATGATATGAGTTCAAATTCAACTTTGGGAAACAACAAGACTGATATCATGAGTCTGAAAGCAATTTTAAGCCCTCATCCTCTACCACAGGTATTTGAACAGAACAAAGATTACATTATTCAAGAACGAGatcattttaaatgtgttttatgtaATGCTCAACTTGAAATTTCATCAGATGCTTCTAAAACGGTTTATCAATTTTCTCAGCATTTAAACAGTACAAATCATAAACGCCTTTACAAAAATAGAACAGCGAAAATAGATGATGATTTGATAAAGTCAACACCAGTTATAAAAGCTTCTGTGAATGATAAAGGAGTAGACTTCATGCACTTGGAAGTAATTTTTCATCCTTATCCTATTCCGgaaattattgaacaaaataagGATCACTTAATCAATGAAGGAAAACATATGAAGTGTATTTTATGTAATGCTCAACTCAAGGTgAGAGAAGAACGAAAAGTAGCAGACTATCTGCAAACATTCACATGA
- Protein Sequence
- MIHKQNEFSLAKNVVEQFTKPAENRTQSSNVNMTSVPLLNNQMDSSSDTSTDLSSLKRILKPYAIPQIIEQNAQFLIQQENHFKCMLCNVQLMVLSDPLKTILQFIQHLESNIHKHKKITRSKIGEQPIKATENKTQSSNINVPSNPLLNNEIDSSSNSSRDTSSNLSRDFSSLKEILKPCPVPQIIEQNKQFIIKQNDHFKCIMCDVQLTVLSDPPKTIYQFTQHLQSKIHKKNKITCGITVKIAEQSTKAAENISRSSSLKMPSNPLLKNEMDFLSLKAIQSPHPIPQIIEQNKDYIIKLNEHFKCLLCDRILQISKDVSNSMADFVSHFMGANHKRKKNTHIKTMENITVQLEKTQHTTSVLPASKPSLWYPNGDTDIFVKCNICNVQISVSSDGSVTNYQISQHLQGKNHKQKERALSMKQNVQVNSKETSTLPESNDMSSNSTLGNNKTDIMSLKAILSPHPLPQVFEQNKDYIIQERDHFKCVLCNAQLEISSDASKTVYQFSQHLNSTNHKRLYKNRTAKIDDDLIKSTPVIKASVNDKGVDFMHLEVIFHPYPIPEIIEQNKDHLINEGKHMKCILCNAQLKVREERKVADYLQTFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -