Aaln047978.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740770.1:72955620-72976632[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.31 3.5e+02 3.6 0.2 13 29 2 18 1 29 0.82 2 11 0.064 72 5.8 0.3 10 29 49 68 39 79 0.81 3 11 0.064 72 5.8 0.3 10 29 99 118 89 129 0.81 4 11 0.064 72 5.8 0.3 10 29 149 168 139 179 0.81 5 11 0.019 21 7.5 0.3 10 29 199 218 189 231 0.82 6 11 0.024 26 7.2 0.2 10 29 249 268 240 280 0.85 7 11 0.023 26 7.3 0.4 10 29 299 318 289 329 0.81 8 11 0.021 23 7.4 0.3 10 29 349 368 339 380 0.81 9 11 0.058 65 6.0 0.2 10 29 399 418 389 431 0.81 10 11 0.024 26 7.2 0.2 10 29 449 468 440 480 0.85 11 11 0.021 23 7.4 0.3 10 29 499 518 489 528 0.81
Sequence Information
- Coding Sequence
- ATGAAATTAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCACCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGCACAAATCGTCAGAATTTCATATAGAAATGAAATTAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCACCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGCACAAATCGTCAGAATTTCATATAGAAATGAAATTAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCACCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGCACAAATCGTCAGAATTTCATATAGAAATGAAATTAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCACCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGCACAAATCATCAGAATTTCATATAGAAATGAAATCAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGAGAAACATGAACAAACCTGGCGCCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGATCAAATCATCAGAATTTCATATAGAAATGAAATCAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCGCCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGCACAAATCGTCAGAATTTCATATAGAAATGAAATCAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCACCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGCACAAATCATCAGAATTTCATATAGAAATGAAATCAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCGCCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGCACAAATCATCAGAATTTCATATAGAAATGAAATTAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCGCCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGATCAAATCATCAGAATTTCATATAGAAATGAAATCAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCGCCACAAAGAAACTGTGAAAACATTTGGACCTGAACGTTATTCGCACAAATCATCAGAATTTCATATAGAAATGAAATCAACTATCAACTATTGTCAAGCTTGTGACAAAGTTTTGACTAGTGACTTAGTGAAACATGAACAAACCTGGCGCCACAAAGAAACTGTGAAAACATTTGGACCTGAAGTAGTAGAACATTAA
- Protein Sequence
- MKLTINYCQACDKVLTSDLVKHEQTWHHKETVKTFGPERYSHKSSEFHIEMKLTINYCQACDKVLTSDLVKHEQTWHHKETVKTFGPERYSHKSSEFHIEMKLTINYCQACDKVLTSDLVKHEQTWHHKETVKTFGPERYSHKSSEFHIEMKLTINYCQACDKVLTSDLVKHEQTWHHKETVKTFGPERYSHKSSEFHIEMKSTINYCQACDKVLTSDLEKHEQTWRHKETVKTFGPERYSIKSSEFHIEMKSTINYCQACDKVLTSDLVKHEQTWRHKETVKTFGPERYSHKSSEFHIEMKSTINYCQACDKVLTSDLVKHEQTWHHKETVKTFGPERYSHKSSEFHIEMKSTINYCQACDKVLTSDLVKHEQTWRHKETVKTFGPERYSHKSSEFHIEMKLTINYCQACDKVLTSDLVKHEQTWRHKETVKTFGPERYSIKSSEFHIEMKSTINYCQACDKVLTSDLVKHEQTWRHKETVKTFGPERYSHKSSEFHIEMKSTINYCQACDKVLTSDLVKHEQTWRHKETVKTFGPEVVEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -