Aaln048269.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740770.1:79548914-79549339[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-05 0.0069 18.4 0.0 2 37 12 47 11 53 0.92 2 2 0.78 1.6e+02 4.4 0.0 23 42 101 121 100 123 0.91
Sequence Information
- Coding Sequence
- atGGCAAGGAAAAGCCAGTATGGCCGGTGGTATGAGGACAGCCTTCAACAAGCTATTGGAGCTTACAAAAATGGAGATTACGTTTTAAATGAATGTAGCCGTGTATATGGCGTGCCTAAAGCAACCATTAAGAGACACGCTGATAATAAAAACTCTTTTGTGAATGAAAGAAAAGCGTTAGGAAGACAGAATACATTTACAGAAGAAATGGAAAAAGTTTTGTGTGAACATATCCTGAAGTTTGAAGAGGCATTATATGGAATGACAATTACTGACATAAGAAAACTAGCTTACGATATTGCTGAGAAGTATTCTCTCCCACAtactttaataaagaaaaaaagattaaagGGAAAAAATGGTACTACAGTTTTATGCAAAGAAATAAGAAATTGTCTCTGCGAAAACCTGAAAATACCTTCTTAG
- Protein Sequence
- MARKSQYGRWYEDSLQQAIGAYKNGDYVLNECSRVYGVPKATIKRHADNKNSFVNERKALGRQNTFTEEMEKVLCEHILKFEEALYGMTITDIRKLAYDIAEKYSLPHTLIKKKRLKGKNGTTVLCKEIRNCLCENLKIPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -