Basic Information

Insect: Aphrophora alni
Gene Symbol: -
Assembly: GCA_963513935.1
Location: OY740771.1:111835116-111837080[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.2e-08 1.1e-05 27.4 0.0 3 35 20 52 18 61 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.2e-08	1.1e-05	27.4	0.0	3	35	20	52	18	61	0.87

Sequence Information

Coding Sequence: ATGCCTAGGAAATACGAACGAAAGCTTGGAAGTAGGCAATACATGGACTACTCTTCGGATAAGTTGAATGAGTGTCTATCAGCTATTCGAAATGGAACCATGACAACAAGAAAGGCTGAGGCACATTTTGGTATTCCCAGACGTacgattattaataaaatgaaagggTATCATTCAAGTAAACCAGGAAAACCTGCTATTTTTAGTGTAGAAGAAGAGAAAACTTTTGTAGATTGTGTTTTTTCCATGAGTGAGTTCGGATTCCCTGTTAATGAATTAGAATTGAGATGTATTGTCAACGCTTACCTATCTAGAATTGGAAGACAAGTTAAACAGTTTACGAATAACTTTCCTGGAAAAGAATGGCTGAGAAGCTTTTTAAAACGAAATCCTGAAGTAACTGTACGTTTTgcagcaaatataaaaaaatctagggCATCAATAAACGAAGTTACACTTAGAgagtatattcaaaatttaaatcaggTTTTAATTGATGTGCCACcgtccaatatttttaattatgatgagAGTAATTTAACCGATGACCCGGGTTCGAAAAGGGTTCTTACTAAAAGAGGCGTAAAATATCCTGAGAATATTCGCAATGCTTCCAAGGCAAGTGTGTCTTTAATGATGTGTGGTTCTGCAATTGGTGAAGTTTTACCCCCATACATagtatataaatcaaaaaatatgtggTCAACTTGGACTGAAGGAGGACCTGTAGGATGtagatataataattcaaaatctggttggtttacaacagaaatatttaCAGATTGGTTCCAAACTATCGTTCTTCCTAAGTTAAAAAAGCTTGAAGGGAAAAAGGTGCTTATAGGAGACAATTTATCCTCACATATAAATGACATTGTTTTAAAGctgtgtatagaaaataatgtCTGTTTTGTATGTTTGCCCCCCAACAGCACCCATCTTACTCAACCGTTAGACGTTGCATTTTTCCGTCCTTTCAAATGTGCTTGGAGAAAAATTTTAGGATCCTACAAAGAAAGCCAAGCCGGAATTCAAAACGCTGTCCTCCAAAAGCAACACTTTCCTCtactattaaaaaagttaatggatGCAATGGCGCCAACATCAGTTCAAAATTTAGTCAGTGGTTTTAGAAAATGTGGAATTTTCCCCTGTGACGTGGACGTCCTTCTAGAACGTTTACCTGGCATTACATGTGAGAAAGAAACAATCGAGGAcagttttaaagagtttttatccAAGAAGAGGGATATCGTTGTAGGCAATACAGTTCCAATGAAGAAAAAGAGAAAAGTGAATGTTGCAGCTGGAAAAAGTATTGCTCATGAAGTTTATCGGTACGTTGATGATGTGGTACCGGTACCAGTACCGGTACTAACTGATGTTGGTTCGTCCAAACAAGTCAGTATTGTAAACCAAGAAAAATCTAAAGAAAGTCTTCAAAAAACTGTTGATGAACATCACCTTAACACTGTAgacttaattaattcaaataaaattgtaaatgttcaaGAAGTATTAAGCGAAGTtaagataaagaaaaagaaaattaatagtaaGCAATCATTAGATTACCGGTACCAATCTTCATCAGAAGGTGAAGATGCTTTTTCTCTTCATGATTCATCAAGTGGAATAGAAGAttttcaagatttatttcctgagaataaagaattacaaaatatatttggaaaaacaTTTCGTCCTTTAAATAAGAAGATTGGGGAGTATGTGGTATTCTCTTATGAAGGTGAAGTTTTTCCTGGAATTATCGAACATTTTACTGATGAAAGAGTGGTCATTTCATCAATGCAACGCTCGACAAAAGCTTGGAAGTGGCCCACCAAACCAGATAAAATGGTGTATACTTGGGACAAGATTTTGGGTTGCATTAATCCACCaagaccaataaataaaagaGGATTTTTCTTGGTTCCAGAACTTTCAGACATTTGGTTTTAG
Protein Sequence: MPRKYERKLGSRQYMDYSSDKLNECLSAIRNGTMTTRKAEAHFGIPRRTIINKMKGYHSSKPGKPAIFSVEEEKTFVDCVFSMSEFGFPVNELELRCIVNAYLSRIGRQVKQFTNNFPGKEWLRSFLKRNPEVTVRFAANIKKSRASINEVTLREYIQNLNQVLIDVPPSNIFNYDESNLTDDPGSKRVLTKRGVKYPENIRNASKASVSLMMCGSAIGEVLPPYIVYKSKNMWSTWTEGGPVGCRYNNSKSGWFTTEIFTDWFQTIVLPKLKKLEGKKVLIGDNLSSHINDIVLKLCIENNVCFVCLPPNSTHLTQPLDVAFFRPFKCAWRKILGSYKESQAGIQNAVLQKQHFPLLLKKLMDAMAPTSVQNLVSGFRKCGIFPCDVDVLLERLPGITCEKETIEDSFKEFLSKKRDIVVGNTVPMKKKRKVNVAAGKSIAHEVYRYVDDVVPVPVPVLTDVGSSKQVSIVNQEKSKESLQKTVDEHHLNTVDLINSNKIVNVQEVLSEVKIKKKKINSKQSLDYRYQSSSEGEDAFSLHDSSSGIEDFQDLFPENKELQNIFGKTFRPLNKKIGEYVVFSYEGEVFPGIIEHFTDERVVISSMQRSTKAWKWPTKPDKMVYTWDKILGCINPPRPINKRGFFLVPELSDIWF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00139458; iTF_00139459; iTF_00139460; iTF_00139461; iTF_00139462; iTF_00139463; iTF_00139464; iTF_00139465; iTF_00139466; iTF_00139467; iTF_00139468; iTF_00139445; iTF_00139446; iTF_00139447; iTF_00139448; iTF_00139449; iTF_00139450; iTF_00139451; iTF_00139452; iTF_00139453; iTF_00139454; iTF_00139455; iTF_00139456;
90% Identity: iTF_00139458; iTF_00139459; iTF_00139460; iTF_00139461; iTF_00139462; iTF_00139463; iTF_00139464; iTF_00139465; iTF_00139466; iTF_00139467; iTF_00139468; iTF_00139445; iTF_00139446; iTF_00139447; iTF_00139448; iTF_00139449; iTF_00139450; iTF_00139451; iTF_00139452; iTF_00139453; iTF_00139454; iTF_00139455; iTF_00139456;
80% Identity: iTF_00139458; iTF_00139459; iTF_00139460; iTF_00139461; iTF_00139462; iTF_00139463; iTF_00139464; iTF_00139465; iTF_00139466; iTF_00139467; iTF_00139445; iTF_00139446; iTF_00139447; iTF_00139448; iTF_00139449; iTF_00139450; iTF_00139451; iTF_00139452; iTF_00139453; iTF_00139454; iTF_00139455; iTF_00139456;