Aaln070365.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740774.1:26371314-26372024[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-07 4.4e-05 25.4 0.0 7 45 21 59 17 59 0.88 2 2 6.6 1.4e+03 1.4 0.0 11 23 134 147 133 149 0.76
Sequence Information
- Coding Sequence
- ATGCCAAGAACATATGAAAGAAAGAGTAATCGGGGTTCTTGGACTAAAAACGGGCTTAAGAATGCTTTTAAAGCTGTCAAACAAGATGGAATGACTACATATAAAGCAAGTAAAGCGTTTAACATTCCTGAAAAAACCTTAAGAAGGAGGATTCAAAACAATAATGACAAAAAACAAAGGCTTGGCCCACAAGGTGTTCTGGGTACAGAAATTGAAGGAAAACTTTCAACCCACATTAAAAAACTTCAGGCTACTGCATTTTGCCCTAGTGTAACTGAAGTAAGGATCCTTGCGTACAAACtagctgaaaaatataaattaaagcaTAATTTTAATAGATCAAAACAAATGGCTGGTTATGATTGGTTCTATAATTTTTTAGAAAGAAATAAAGATTTTTCTGTAAGAAAAGCTGAGGGGCTTTCTCTTTCTCGAGCCCAGGGCCTTACAAGAGAGGATGCCGATTCCTATTTCAACTTATTGAAATCAATTCTGGACGAAAATGATTTAATGGATAAACCATCGAATATTTATAATGTAGACGAAACTGGACTACAATTAAATAACAAACCTGGATTTGTTCTTGCTGAAAAAGGAAGCAAGGATGTGCATAAACTTACATCtggagaaaaagaagaaaatatatcaGCTATTGTTTGTTGCAATGCTGAAGGAAATTTCCTTCCCCTGTCTGCATCTTCAAAGGAGTGA
- Protein Sequence
- MPRTYERKSNRGSWTKNGLKNAFKAVKQDGMTTYKASKAFNIPEKTLRRRIQNNNDKKQRLGPQGVLGTEIEGKLSTHIKKLQATAFCPSVTEVRILAYKLAEKYKLKHNFNRSKQMAGYDWFYNFLERNKDFSVRKAEGLSLSRAQGLTREDADSYFNLLKSILDENDLMDKPSNIYNVDETGLQLNNKPGFVLAEKGSKDVHKLTSGEKEENISAIVCCNAEGNFLPLSASSKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -