Aaln089199.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740779.1:40146239-40148092[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-09 2e-06 29.7 0.0 1 39 18 57 18 61 0.91
Sequence Information
- Coding Sequence
- atggTTCGAGTGTACAAACGAAAACTTGGTGCTCGACGCTATGCAGATTATTCACCAGAGCAGTTAGAGGAATGTTTGCAAGCAATAAGGGATGGTTCATACAGCCATCGTCGAGCTGCAGAACACTTTAATATACCTAGAcgaactattttaaacaaactgaaacAGAAGCGTAGTAAACAAGTAGGGAAACCTACAATATTTTCCAGAGATGAGGAGGAATCTTTTGTTTCGTACATAGAAACATTGAGTGATTTTGGCTTCCCAATAACTACGGAAGATCTCAGGAATGCCGTCAAAATTTACTTAGAGAGAACTAGTCGTGTCGTTGAAGAATTTCAAGGGAACAAGCCTGGCCTTGAGTGGCTAAAACATTTCTTGATGCGTTACCCAAGATTGAAAGAGCGCATAGCATCCAACATAAAGAGAAGTCGAGCTGCAGTTACCGAAGATATCCTTCaggattatattaaaaacttgcAAGAAGTTATCAAAGATGTACCTCCTGAAAATATTTGGAATCTAGACGAGACCAATTTGGCAGATGACCCTTCAAAGAAGAAAGTTATTTGTCGCCGTGGCACAAAATATCCTGAAAAACTGTGTAATTTTTCCAAATCAAGCACCTCTATTATGATTTGCGGCAGTGCGGCTGGTGAAATATTGCCACCCTTTGTTGTGTACAAAGGTACCCAGATGTGGGACGTTTGGACCGAAGGTGGTCCAAAAAACACTCGCTATTTTAGCACAAAGTCTGGGTGGTTTGATGGACCAGCCTTTAATGAATGGTTTGAGAGTTTGTGCCTGCCACGACTTAAGAAAGCGGTAGGAAAAACAGTTGTGGTTGCGGATAACTTATCCAGTCACTTAAATGTCGTTATTTTTGAGAAGTGTAGAGAAAATAATATCAGTTTTGTATGTCTCCCCCCTAACAGTACTCATTTAACGCAACCGTTAGACGTGGCTTTTTTTAGACCTATGAAGGTTGCTTGGAGAAATATCTTAAGTGACTGGAAAAATACCCCAAACGGTATGAAAGCAGGAGTTTTGCCCAAGCATGTCTTCCCTTCATTGCTGAAAAAACTTCTGGAAGACTTGGAGCCCAACATGAAAAAAAATCTTGAGAGCGGATTTAAAAAAACTGGTATATATCCATGTGACATACAACCTCTATTGGACAGAATAGGCCAAAAAGCAGTTGAACCCTCAGCTGTAAGCTCAGCATTTTTAGAACTTGTGCAAACAACCAAATCCATAATAGGCGAAACGTCCACAAACACTAAAAGAAGGAAGAAGATACAACTTCCTGCAGGTAAAAGCCTGTCTAACGAAGAAATGCTAAATACCATATTGATTTCCCCTGCTAGCACAAGCAAGGCCTCTAATAACATAGTCAAGTCCAAAACTAAGAAGCCCCCTAAAAAGAAAAGTCAAAGAAGTTATAAGGGAAGTGATGATGATAATGTTTTAAGTGAAATGGAATTAAATCTCAGTGAAAGTTCAGATGAAGACTGGGAATCATTCCGGAAAAAACAACTGGAATTGTTAGAAGAAGAAAATAGGAAACCAAACAAACCAGGCATACAACCAGTAAAAAAGCAAGTGGACACCTTCGTGgtcgtaatttatcaaaatgaacACTATCCAGGCGTTATTGAAAGTTTTAATGAAGAAGGTGCAGTAGTGAGTGCTATGTTTAAGACGCCTAAAGGGAATTGGAAATGGCCAGAGAAAAAGGACTCAATCGCTTACCCTTGGGAAGAGATTCTTGGTAGCATTAATCcgccaaaaaaaataaataaaaggggcATGTTCAGCGTCCCAGAACTTATGTCTGATCTtgactgtttttaa
- Protein Sequence
- MVRVYKRKLGARRYADYSPEQLEECLQAIRDGSYSHRRAAEHFNIPRRTILNKLKQKRSKQVGKPTIFSRDEEESFVSYIETLSDFGFPITTEDLRNAVKIYLERTSRVVEEFQGNKPGLEWLKHFLMRYPRLKERIASNIKRSRAAVTEDILQDYIKNLQEVIKDVPPENIWNLDETNLADDPSKKKVICRRGTKYPEKLCNFSKSSTSIMICGSAAGEILPPFVVYKGTQMWDVWTEGGPKNTRYFSTKSGWFDGPAFNEWFESLCLPRLKKAVGKTVVVADNLSSHLNVVIFEKCRENNISFVCLPPNSTHLTQPLDVAFFRPMKVAWRNILSDWKNTPNGMKAGVLPKHVFPSLLKKLLEDLEPNMKKNLESGFKKTGIYPCDIQPLLDRIGQKAVEPSAVSSAFLELVQTTKSIIGETSTNTKRRKKIQLPAGKSLSNEEMLNTILISPASTSKASNNIVKSKTKKPPKKKSQRSYKGSDDDNVLSEMELNLSESSDEDWESFRKKQLELLEEENRKPNKPGIQPVKKQVDTFVVVIYQNEHYPGVIESFNEEGAVVSAMFKTPKGNWKWPEKKDSIAYPWEEILGSINPPKKINKRGMFSVPELMSDLDCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00139470; iTF_01309325; iTF_00209729; iTF_01309316; iTF_01309317; iTF_01309318; iTF_01309319; iTF_01309321; iTF_01309323; iTF_01309327; iTF_00998546;
- 90% Identity
- iTF_00139470;
- 80% Identity
- -