Aaln022109.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740766.1:132741259-132743217[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-09 2e-06 29.7 0.0 3 37 17 51 15 57 0.92
Sequence Information
- Coding Sequence
- ATGCCCAGGaactacaagaaaaaaactaCAAGAGGCGAAATAACCATTGATATCTTTCAAAGGGCATACGAAGAGATTAGGAATGGCAGGATGTCTATTAGGGAAGCGgccaaaacttttaatattgacaaaatgactctttatagatacaaaataaaaaaagaaaaagtagttGAGACACCACAGGCAATTGAGAAGGATGTGCAAATGGGGTATGCTAAACATCGACAAATATTGAATGATGAACTAGAGGAGGAgcttagtaaatatattttaacaagctCTAAAATTTACTATGGATTAACTCCTAAAAATGTTCGGGAGCTGGCCTTTGAACTGGCACTAGCAAACCAAGTGAAAGTTCCAGATACCTGGATAAATGCGGGAATTGCATCTTCAGAATGGTTTTCAAAATTCTTGAAAAGGAAACCCAATCTCTCTTTGAGGGAGCCAGAAGCGACTAGCCTTAGTCGAGCCACAAGCTTTAACAGGCACAACGTTGCAACATTTTTCGAAAACCTTAAAAAAGTGTTCGAGaaatataagtttcaaaacaaagatgTGTGGAACTCGGACGAAACTGGGGTGCAAACCGTCCAAAGACCAAACAAAATCTTAGCTGAGAAAGGAGTTCGCCAAGTTGCAAAAGCTACTTCCGCCGAGCGAGGGCAAACAGTTACACTCGCAACTGCTGTCAATGCCATTGGCAACGCTATCCCACCCCTTTTTATATTTCCTAGAGTATTTTTCAAGGAACACTTTATCAAGGGAGGACCTCCAGGGTGTATCGGCACAGCACACCCATCTGGTTGGATGACGGGATCATCATTCCtaacttttgtaaaacattttcatagCCATGTTAAGTCAACAGCCAAACAACCTTGCCTGTTATTGCTTGACAATCATGACTCCCACCTGTCAATTAATGTACTGAACTTTTGTAAAGACAATGGGATTGTTTTGCTGTCTTTTCCTCCCCATACGTCCCACCGCCTCCAGCCCCTGGATAGAACAGTTTATGGACCATTCAAGAAGTTCTACTTTTCAGCTGTGGACAACTGGCTAATCAGCAATCCTGGGAAAACCataacaatttatgaaattcCTAGTCTTGTAAATAGTGCCTTTTCGAGTGCCATGACGCCAAATAATATTATAGCAGGTTTCAAAGCTACAGGAATAATGCCGTATAATCCAGAAATCTTTACAGATGAAGATTTTTTGTCTAGTTTTGTGACTGATCGTCAGCCTTCTGCATCAACAGAAGTCCATCAGCCTTTTCATTCAGCAGAAGTTCATCAGCCATCTACTTCAGCAGAAGTTGATCAGCCTTCCACCTCAGCAGAAGCATATCGGCCTTCAACATCAGCAGGACTTAATCAGCCTTCTACATCGAAAGAAGTTGGTATCATTGAAAATGAACCACTGAAGCGGACACCACTTGCCTCTACTAGCCTTGGAGCTATTTCGCCAATTGTTATGCCAGAAGAAATACGTCCTCTACCAAAAGCAGGAGAACGTAAAACAAGTGGAAAAGGCAGACAACCATTGAAGTCTTGTATTCTCACAGATActccaataaaaaacaaaattgaacaggaaacaagagagagagagagaaagaaatcTATCAAGACAGAAAAACAtaagttaaagttatttaaatcatttgggGGTAAACTAAGCAAAGACATAGACAAACCAAGAAAAGAAGCCaaagataaaaaaagagagaaacgaagaaaaatcaaaatagaagaaTCGGACACTGATGAAGATGGGGAGTCTTTTTGTTTGATGTGTTTCAAGAGTTATTCTTCATCTAAACCTGGTCAAGACTGGATCCAGTGTATTTCCTGCAAGAAGTGGGCACACATCACCTGTGCCGGGAACAGTCCCTTTTATACGTGTATTAACTGTCAATCAGACCCAAATTTTACTTCAGAGTCAGAGTAA
- Protein Sequence
- MPRNYKKKTTRGEITIDIFQRAYEEIRNGRMSIREAAKTFNIDKMTLYRYKIKKEKVVETPQAIEKDVQMGYAKHRQILNDELEEELSKYILTSSKIYYGLTPKNVRELAFELALANQVKVPDTWINAGIASSEWFSKFLKRKPNLSLREPEATSLSRATSFNRHNVATFFENLKKVFEKYKFQNKDVWNSDETGVQTVQRPNKILAEKGVRQVAKATSAERGQTVTLATAVNAIGNAIPPLFIFPRVFFKEHFIKGGPPGCIGTAHPSGWMTGSSFLTFVKHFHSHVKSTAKQPCLLLLDNHDSHLSINVLNFCKDNGIVLLSFPPHTSHRLQPLDRTVYGPFKKFYFSAVDNWLISNPGKTITIYEIPSLVNSAFSSAMTPNNIIAGFKATGIMPYNPEIFTDEDFLSSFVTDRQPSASTEVHQPFHSAEVHQPSTSAEVDQPSTSAEAYRPSTSAGLNQPSTSKEVGIIENEPLKRTPLASTSLGAISPIVMPEEIRPLPKAGERKTSGKGRQPLKSCILTDTPIKNKIEQETRERERKKSIKTEKHKLKLFKSFGGKLSKDIDKPRKEAKDKKREKRRKIKIEESDTDEDGESFCLMCFKSYSSSKPGQDWIQCISCKKWAHITCAGNSPFYTCINCQSDPNFTSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00139363; iTF_00139368; iTF_00139369; iTF_00139402; iTF_00139530; iTF_00139373; iTF_00139473; iTF_00139365; iTF_00139378;
- 90% Identity
- iTF_00139365;
- 80% Identity
- iTF_00139373;