Aaln056376.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740772.1:18983824-18984624[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-13 7.2e-11 43.9 0.0 2 45 18 62 17 62 0.92 2 2 1.1 2.3e+02 3.9 0.1 12 24 137 150 135 151 0.78
Sequence Information
- Coding Sequence
- ATGCCGACCAGATACAAAAGGAGGGCAGGTTCTTCCAGGGGAAGCTGGACACAAGAACATTTGGTAAAGGCCCTTAATGCTGTAAGGAACAAGTTAATGGGTGTCAACGAAGCTGCCAGGCATTTTGAGATACCTCAAACAACCTTAAAAAGAAGAATGAAATCCGGCATAGTGTCAGTAGGTCGTCTTGGGCCACCATCTGTTCTCGGCGAAGAAGGTGAGAAGAAAATGGTTAttcacattaagaaattacaGTCTCGGGGGTTTACTCCTACTAGAGATACAGTTCGAGAGATGGCGTTCAAATTAGCAGAAAGACTTAAAattccaaacaattttaataaggaAAAGCAGAAAGCAGGTTTTGACTGGCTTGAAAGTTTCCTGGCTCGAAACTCTGAATTATCAGTAAGAAAAGCAGAAGGGGTCTCGGTAAACAGAGCTGCAAGGATGAATAgggaaacagttttaaaatatttcgacATTTTGGAGAGAGTCCTTTCTGAAAATGATTTATTGGGAAAACCAGGTCATATATATAATGTAGATGAGAGTGGCTTGCAGTTGAATAATAAACCGGGACAAGTAATAGCAGAGAAAGGCTCAAAAAATGTGAACGTTATTACAAGTGGGGAAAAAGGTGAAACAATTACACTTGTGGCTTGTTTCAATGCTGAAGGTGCCTACATTCCTCCCTTCTGTATTTTTAAAGGGAAGAATAAGAAGAAAGAGTATGCTGATGGTATGCCACCTGGATCAGAGGTTGTCATGAATGAGAAGTCTGCCTATgtgatttcataa
- Protein Sequence
- MPTRYKRRAGSSRGSWTQEHLVKALNAVRNKLMGVNEAARHFEIPQTTLKRRMKSGIVSVGRLGPPSVLGEEGEKKMVIHIKKLQSRGFTPTRDTVREMAFKLAERLKIPNNFNKEKQKAGFDWLESFLARNSELSVRKAEGVSVNRAARMNRETVLKYFDILERVLSENDLLGKPGHIYNVDESGLQLNNKPGQVIAEKGSKNVNVITSGEKGETITLVACFNAEGAYIPPFCIFKGKNKKKEYADGMPPGSEVVMNEKSAYVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -