Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014514.1:26788591-26794408[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.8 1.4e+02 4.6 0.1 2 23 257 279 256 279 0.88

2 14 9 6.9e+02 2.4 4.4 1 23 327 350 327 350 0.94

3 14 0.043 3.3 9.8 0.2 1 23 440 463 440 463 0.95

4 14 0.00021 0.016 17.1 3.8 1 23 466 489 466 489 0.96

5 14 0.032 2.5 10.1 0.8 2 23 496 518 495 518 0.90

6 14 0.0058 0.44 12.5 4.4 1 21 596 616 596 617 0.95

7 14 0.0033 0.25 13.3 2.1 2 23 629 651 628 651 0.94

8 14 0.0051 0.39 12.7 1.0 1 23 654 677 654 677 0.96

9 14 8 6.1e+02 2.6 1.1 5 23 686 704 679 704 0.84

10 14 1.7 1.3e+02 4.8 0.4 2 23 738 760 737 760 0.94

11 14 0.0046 0.36 12.8 0.5 2 23 769 791 769 791 0.96

12 14 0.005 0.38 12.7 0.3 3 23 798 819 797 819 0.97

13 14 4.1 3.1e+02 3.5 0.1 2 23 905 927 904 927 0.92

14 14 0.42 33 6.6 0.9 1 23 940 962 940 962 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.8	1.4e+02	4.6	0.1	2	23	257	279	256	279	0.88
2	14	9	6.9e+02	2.4	4.4	1	23	327	350	327	350	0.94
3	14	0.043	3.3	9.8	0.2	1	23	440	463	440	463	0.95
4	14	0.00021	0.016	17.1	3.8	1	23	466	489	466	489	0.96
5	14	0.032	2.5	10.1	0.8	2	23	496	518	495	518	0.90
6	14	0.0058	0.44	12.5	4.4	1	21	596	616	596	617	0.95
7	14	0.0033	0.25	13.3	2.1	2	23	629	651	628	651	0.94
8	14	0.0051	0.39	12.7	1.0	1	23	654	677	654	677	0.96
9	14	8	6.1e+02	2.6	1.1	5	23	686	704	679	704	0.84
10	14	1.7	1.3e+02	4.8	0.4	2	23	738	760	737	760	0.94
11	14	0.0046	0.36	12.8	0.5	2	23	769	791	769	791	0.96
12	14	0.005	0.38	12.7	0.3	3	23	798	819	797	819	0.97
13	14	4.1	3.1e+02	3.5	0.1	2	23	905	927	904	927	0.92
14	14	0.42	33	6.6	0.9	1	23	940	962	940	962	0.96

Sequence Information

Coding Sequence: ATGGAAACGAAACTCTGCAGACTGTGCGGAAAATTGACCGATAATTACGTGaatatttttaagaccgaagGTTTTAAATCGAAAGTTGAGACATGTCTGCCAGTTGTGCTATGTCAACACACTCTGTTACCCGATACCGTTTGCAAACAATGCCAAGAAAGCATCGATATTTTCTACGCGTTCATGAAAAACTGTTTACAAAGCATAATAATCCTCGAGAAACAACTTGACGTCACCGACTCCTGCCTCAAAAGTCGCAGAAAATCCGACAAGGGGGTTTCCGTACATCTCAAGCCTATAACCTCCGAAACGGCCGTTCAAACAAACTGCGAAGAATTATCGTCGAAATGCGACAAATTACGCGAACATATCTCGGAAGCCAAACAACTCCTAACCTGCAAAGTCCCTGAATATCCACTCGTTGATTACGAAGTCTCGGACGAATCAAATACGGACCCGTCTGGTTTCGGCCGGCAATTTTTTGACAATCAAGAAAATAGGATATTAAAGGAAATTGCGGAAAAGATCAGCTTGAAACGGAAAGGAGACGAGATTTTACCATTGAAGCCGAAAATCTGCAAATACGACTCCAGCAGACGGAAAACGAGGCCCCCGAAACGTATCGAGGTGGCCCCCGTTGTCGAGATCTCCGAAGATGCTTGGGTATCAGGGGACGCCCCCGTGCATAAGAATGGCGAGTGTGTTGAAGCCGGGGGCTTCGAAAATAGTCAGGAAGATCAAaagttACCATTATTTCAGTTACCACAAACGTGTTTTCTTTGCGACTCATCTTTTGAGAATGCGGCTGTTCTTGCGACTCATGTCTTTGAATTGCATGGCATTGACATGGCCCAAGTTATTGCGTCTGGTGTGGGCCCTGCGGATACCAAAAAAGCGCTGCCTAAGCTTGTGAAGAtcaataataagaagaacaaaCCTGATAAACAAGAAACCATCCACAACGACAACATCGAAAATTTCATCTGCCCGACATGCCAGAGCGTCCACAGAACCGAGTCCGACCTGCACAACCACATCCACCAGTACCACCCGCACAAACTTGCACTCGCATGCGGGCTCTGCAAGCACCTCCCCTCCACATACTCAGACCTAACCTCACACCTCGAAAACTGCCTCCTAGAATTCCCCCCGCAATCCCGATACTCGTGTCTCATCTGCCGATTCAACGACGACAACGTAAAAACAGTCGAAAATCACGTCTCCATACACCAATTCATCttggaaaattgcaaaaaagccAATAAGATGTTCGATCCTTCCGATTACGTCGATGTTAACGACAGTTGTGCAAAGGTTTACGCTTGCGACGAATGCTCGGAAGGGTTTGGGAGTTTTAAGGAATTCAGCGCACACCGACGAGCGCAGCACCAAATCTTCCATTGCGATCTATGCGGGAAGTTCTACGGGAGGAATTCGCATCTCTGGAAACATGTAAATCGTTTGCATAAGGGAAATCCCATCGTAACTTGCCAGATTTGTTATAAGACGAGCGCGTCGAAGTACCATTTAGCCGTGCACTTCGGGAAGATCCACGGGGTTAAAAATGCGCAGAATGATGATTTTATGTCGAAAAAGTTTGAGGGTTTTGATTTCCAATCGGTTAAACAGAGTTTTTTACGGCAGGAATTGCTTAGGACTTCAACGAGCGACGAAACATCGGAAGAACCCGAGGAAAAGCGGTCTCTCCCCAAAGAAATCGACACCTCGAGTAAGGTTTACACGAATATAATAACGAATTACACACCCCCGACGAATGACGGTGAATTTAAGTGCCCGAAATGCACGAAAGGCTTCCACAAGAAGAATCTCTTAAAGAAACACAAGAAAAACTGCCGGCCGCGGTTGCAAAAAGACCTACTAACGCGTTGCAAATCCTGCTCGCGGATCTTCAAAGACCGTCAAAGCCTCACGAAACATCTGATAAACTACCACACCGAATACAACTGCGAAATCTGCGACCAGAAGTTCCAAAGCAAGTGCGAGATAATCGCGCATATCCGTTTCGGGCATCCGGATTGCGACGAACTAATCTGCAAGTGCGGCGCGATCCTCCGGACTCGAAAAGAGTTCAAGACGCACAAATCCGACCACAAGAACTCGTTCATCTGCTACTTCTGCGGGGACAATCTAGCGTCGACCGTTCGGCTAAAAATGCACGTCTTAAGTCTGCATCGGACGATCCTCAGCCTCAGTTGTGGCGTCTGCTTGAAGCTATTCGAGACGCAGCATATCCTCCGCGACCACGTGCGCTTAGCGCACAAGGAGAGACTGATGAAACAGAACACGTGCACGGTCTGCGGGAAAACTTACGCGACACGCTGGAAAGCCTACGATCACATGAACAAATCCCACGGGAAGATTTTTAAGGCGTGCAAGGAGTGCCTAAACGTCTTTACTTCGCTGGACGAGCTAGAATCGCATTATAAGACGACGCATTACGAGAAACCGAAGTGCGAAAGCGAAGAATCTCCGATCAGCGATAACGAAGAATACAACAATAAATCGATCCTAGAGAAACCTTTAACgaagaaaaaattgattaatACGACGAGTATCGAGAACTCCTCTAAGCGAACGGTTTACGAGAACGGAGACGATCCCGCGCTCTGCGAGATCTGTCTAAAGACGTGGCCCGCTAAAAAACACCTGTGGCAGCATTATATCCGTTGTCACAAAACCGTAGCAGCGACCGTATGCGGAATTTGTTTAAAAGCAAACGATTCGTACGAAAATCTCCAGGAGCATCTGCAGGAGAGACACTCGAATCTCCTCCATGGGCAAGGGTATGGTTCGAATTTTATCTGTCGGATTTGCGGGAGGTACCACAACGCTTCCTCGAAACTAAAACTGCACATGGCGATACACGAAAACTTTGAATGGTCGATGATAGAGCGTTTCGAGAAGAGAACGCAACCCGTCGAGGAATTAGAAATAAAATCCGAAGAGATTAACTTTGAGAGTTTGATCGAGGAGGTCGAGGAATCGGATACGGATCATTCGAAATCGTCACAATCGTCGGAACGGTCGGAAGATGTCTCCGATGATGACGACTCGGAATTTTTGAAGAACGAGATGGTCATGACGGAAGGGGATACGTCAAATTCTAGTTTTCGGGAAATTAAGCAGGAAGATATGTCGATCGACGACGAAGAGGAGAAACTAACGTCGGCGATTCGTTCGATTTGCTACGAGCAGAAGTTTAAGGAGGACGTGGAGATTGAGATGGATTTTTCGGAAATTCAGGTGCAGGCGTTGAACAGTCACGAGATACAGACTGCCGTCGATAGTATACTGTAG
Protein Sequence: METKLCRLCGKLTDNYVNIFKTEGFKSKVETCLPVVLCQHTLLPDTVCKQCQESIDIFYAFMKNCLQSIIILEKQLDVTDSCLKSRRKSDKGVSVHLKPITSETAVQTNCEELSSKCDKLREHISEAKQLLTCKVPEYPLVDYEVSDESNTDPSGFGRQFFDNQENRILKEIAEKISLKRKGDEILPLKPKICKYDSSRRKTRPPKRIEVAPVVEISEDAWVSGDAPVHKNGECVEAGGFENSQEDQKLPLFQLPQTCFLCDSSFENAAVLATHVFELHGIDMAQVIASGVGPADTKKALPKLVKINNKKNKPDKQETIHNDNIENFICPTCQSVHRTESDLHNHIHQYHPHKLALACGLCKHLPSTYSDLTSHLENCLLEFPPQSRYSCLICRFNDDNVKTVENHVSIHQFILENCKKANKMFDPSDYVDVNDSCAKVYACDECSEGFGSFKEFSAHRRAQHQIFHCDLCGKFYGRNSHLWKHVNRLHKGNPIVTCQICYKTSASKYHLAVHFGKIHGVKNAQNDDFMSKKFEGFDFQSVKQSFLRQELLRTSTSDETSEEPEEKRSLPKEIDTSSKVYTNIITNYTPPTNDGEFKCPKCTKGFHKKNLLKKHKKNCRPRLQKDLLTRCKSCSRIFKDRQSLTKHLINYHTEYNCEICDQKFQSKCEIIAHIRFGHPDCDELICKCGAILRTRKEFKTHKSDHKNSFICYFCGDNLASTVRLKMHVLSLHRTILSLSCGVCLKLFETQHILRDHVRLAHKERLMKQNTCTVCGKTYATRWKAYDHMNKSHGKIFKACKECLNVFTSLDELESHYKTTHYEKPKCESEESPISDNEEYNNKSILEKPLTKKKLINTTSIENSSKRTVYENGDDPALCEICLKTWPAKKHLWQHYIRCHKTVAATVCGICLKANDSYENLQEHLQERHSNLLHGQGYGSNFICRICGRYHNASSKLKLHMAIHENFEWSMIERFEKRTQPVEELEIKSEEINFESLIEEVEESDTDHSKSSQSSERSEDVSDDDDSEFLKNEMVMTEGDTSNSSFREIKQEDMSIDDEEEKLTSAIRSICYEQKFKEDVEIEMDFSEIQVQALNSHEIQTAVDSIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981828;
90% Identity: iTF_00981828;
80% Identity: -