Asti002951.1
Basic Information
- Insect
- Aphodius sticticus
- Gene Symbol
- -
- Assembly
- GCA_963966075.1
- Location
- OZ014506.1:40067632-40071251[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9 6.9e+02 2.5 2.9 1 23 172 195 172 195 0.93 2 10 2e-05 0.0015 20.3 5.6 1 23 363 385 363 385 0.96 3 10 8.1e-05 0.0062 18.3 0.6 2 23 392 413 391 413 0.96 4 10 0.00015 0.012 17.5 2.3 1 23 418 441 418 441 0.97 5 10 9.3e-06 0.00071 21.3 2.6 1 23 486 508 486 508 0.98 6 10 0.0002 0.016 17.1 0.1 3 23 521 541 519 541 0.96 7 10 2.5e-05 0.0019 19.9 4.7 1 23 547 569 547 569 0.97 8 10 9.9e-06 0.00076 21.2 4.2 1 23 575 597 575 597 0.98 9 10 1.5e-05 0.0011 20.6 0.8 1 23 603 625 603 625 0.99 10 10 7.5e-06 0.00057 21.6 0.2 1 23 631 654 631 654 0.98
Sequence Information
- Coding Sequence
- ATGAGTTTCGAAGCAAATTTCGATAATATTTGTCGCATATGCCTCAAGAAATGCGTGCACATGCGACAAATTACGCATGTTGACGGTAAATCGCCCGGAAAATTAACTGTAATCCAGCTGCTTAAGCATTGCGCCTCAGTGCAGGTGGAAGAAGGCGATAGTTTACCACAGCAAGTTTGCGTAAAATGTATATTGCATATGAGGAGAAGCGTCCTTCTGGAGCAATTAGTGATTAATTCGGATGCTACTTTACGAAGTGTCTTGAATTCAAAAACTCAACAACCCAAAATTGAAACTATTTATCTTGATTGTCCCATTGATTATTTTATCAGTGAAGAAGAAATAACTACTTGTAAAGAAGAATTAATAACAACTGACATTGGACAACTGCAGAAAAATAAAGCAATGATAGCATCTTTAGACGATATAAACATTGAAAATGCAAATATAGGTATAGAAATTACTAACCCAACCACAGTTATTGATGCAAACAGAAAGAAAGAGAAGCGGTTATACTACTGTATGTATTGCACCGGCACATATGACAATAATCAAATGTTCCATCTTCATTTTGCGAAGGAACATCCAAAAGCATATagttaCACATACCTCAAAAACTTGCTGCAAACAAAAAAACCGGTCAAGGATATGTCTCCACTTGACCCAAAGATGGTAAAAGAGAGCCTTGAGAAGAGTGCTAAAGATGCTCTAGAAACTGAAAACAGCCACCAAGAAACAGAAAACTTGGAATCTGCAGGTCCTAAGGATGAGATCTTCAAACAACCCTTACCTCAacacaaaaaacctcaaaagcgACAATCAAAACTTATGGAGGATACGTCTTCCCTTGAAGCAAAGTACGTAAAAGAGAACCTTGAGAACAATGTTGCAGACGCTCTAAAAGCCAAGAACAGCCATCAAGAAGATGAGAACTCGGAAGTTCCAGATCCCGAAGAGGATATCTTCAAACAACCCCTTCCACAACTCAAGAAACCAAAAAAGCGGAAATTAAAATTCTGTGCTGTTTGCGGAAAAACTGTTTTGTGTCTCAAATTCCACATGCGATTGCACACTGGCGAGAGACCCCACATATGCAACGAGTGCGGCATGACTTTCAAGCACCCCTCGCACCTACGGGTGCACAAATCAACGCATGCCGGTATTAAAAATTCCGTATGCGAAGTCTGCGgaaaaagatttttaaatcaaactaATCTCACTTCTCACATGTACTCGCATATGAGTCCAACTCATAAGTGCACGCAATGCCCAAAAGTATACCGAAGAAAGCTTGAATTGGATAAACACGTTCGCATCACGCATATAGGGGATCGGCCCTTTATATGTCCATTTGAGGAATGCAAAAACCATTGTggatatatcacaaaaaagacaTTGACTTCTCATTTGATATCAAAACACAAAAATTTGTCTGTCATTGAAACTGACAATCCATTCCGATGTACTGTATGCCCTAATGTGTTTTCAAAACAACATTACTTAAATAGACATATGCAAGTACACACTAACGAAGACAGTAACAATCTGGATCGTCTGGATTGTAATATCTGCGGGAAAGTTTTAGCTAGCCGTGAgggattaaaaaatcattacctAAGACATGGCCCCTCGCGTACTCACAAATGCCATATTTGCAATAGGTCATTCAGCGATGAATCAAAGATGAACGCACACATTCGGTTCCATGCAAAGCCAAAACCGCACGAGTGTACAACTTGCCACAAACGGTTTGTCGATAAGAATGCGTTGAGAATACATATCCGTACTCATACGGGAGAGAAACCTTACAAATGCGAGATCTGTGGTAATCAGTTCAATGTTAAGAAGACACTACAGACACACATGAATATACATAATGGAATTTTGCCATATGAGTGCAAGTTATGTGAGAAGAAATTTCCGAATAATGGATGGCTAAATACGCATATCCTCACTGTGCATAAATTAGGTTGA
- Protein Sequence
- MSFEANFDNICRICLKKCVHMRQITHVDGKSPGKLTVIQLLKHCASVQVEEGDSLPQQVCVKCILHMRRSVLLEQLVINSDATLRSVLNSKTQQPKIETIYLDCPIDYFISEEEITTCKEELITTDIGQLQKNKAMIASLDDINIENANIGIEITNPTTVIDANRKKEKRLYYCMYCTGTYDNNQMFHLHFAKEHPKAYSYTYLKNLLQTKKPVKDMSPLDPKMVKESLEKSAKDALETENSHQETENLESAGPKDEIFKQPLPQHKKPQKRQSKLMEDTSSLEAKYVKENLENNVADALKAKNSHQEDENSEVPDPEEDIFKQPLPQLKKPKKRKLKFCAVCGKTVLCLKFHMRLHTGERPHICNECGMTFKHPSHLRVHKSTHAGIKNSVCEVCGKRFLNQTNLTSHMYSHMSPTHKCTQCPKVYRRKLELDKHVRITHIGDRPFICPFEECKNHCGYITKKTLTSHLISKHKNLSVIETDNPFRCTVCPNVFSKQHYLNRHMQVHTNEDSNNLDRLDCNICGKVLASREGLKNHYLRHGPSRTHKCHICNRSFSDESKMNAHIRFHAKPKPHECTTCHKRFVDKNALRIHIRTHTGEKPYKCEICGNQFNVKKTLQTHMNIHNGILPYECKLCEKKFPNNGWLNTHILTVHKLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -