Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014506.1:69812224-69837896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0058 0.45 12.5 2.1 2 21 251 270 250 271 0.93

2 10 0.00094 0.072 15.0 2.9 3 23 280 301 278 301 0.94

3 10 0.0012 0.089 14.7 1.8 1 23 308 330 308 330 0.98

4 10 0.0024 0.18 13.7 0.6 1 23 336 359 336 359 0.94

5 10 1.8e-06 0.00014 23.5 1.2 1 23 364 386 364 386 0.98

6 10 6.3e-07 4.8e-05 25.0 2.6 1 23 395 417 395 417 0.99

7 10 4.4e-05 0.0034 19.2 0.6 1 23 422 444 422 444 0.97

8 10 2.9e-05 0.0022 19.7 1.2 1 23 450 472 450 472 0.99

9 10 3.3e-06 0.00025 22.7 0.5 1 23 478 500 478 500 0.98

10 10 0.00018 0.014 17.2 2.6 1 23 506 528 506 528 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0058	0.45	12.5	2.1	2	21	251	270	250	271	0.93
2	10	0.00094	0.072	15.0	2.9	3	23	280	301	278	301	0.94
3	10	0.0012	0.089	14.7	1.8	1	23	308	330	308	330	0.98
4	10	0.0024	0.18	13.7	0.6	1	23	336	359	336	359	0.94
5	10	1.8e-06	0.00014	23.5	1.2	1	23	364	386	364	386	0.98
6	10	6.3e-07	4.8e-05	25.0	2.6	1	23	395	417	395	417	0.99
7	10	4.4e-05	0.0034	19.2	0.6	1	23	422	444	422	444	0.97
8	10	2.9e-05	0.0022	19.7	1.2	1	23	450	472	450	472	0.99
9	10	3.3e-06	0.00025	22.7	0.5	1	23	478	500	478	500	0.98
10	10	0.00018	0.014	17.2	2.6	1	23	506	528	506	528	0.98

Sequence Information

Coding Sequence: ATGGTTAGCATAATGGAAATTATGCAGTTGTGTCGATTGTGTTTAGTTAAGGAACAAGTGAACATACCAATTTTTGAGCAACCGGGCGATATTAGagaagtttttttgaaaataagtgCCTGTTTGCCGGTCAAGgtTTCAAAAGAGGACAAGCTACCAAAAAAGATTTGCGACGGTTGCTCATATAAACTAGACTTATTGTATCAATTCTCAAACACCTGTGCCAATGCCGAGAAACAACTATTGACTTGGCTGAATCAATTGAACTCTGATACAATGAAGGAAGATGCTGATATCGCACATCAAACACAGACATCCCAGCCACATCCTGTTAAACAAGAAATGCTTGATATAGCAGATAATGGAAATGACACCGCCAACTCCGAGTATCTCCTCCAGCAGCAGTTTGAAGGAAGTGACCTTGCAGCGGTAGAATCTCATGATGAAAATGGAGGAGGAGATGACGGTGGCGGTGATGATAGTTCAGATGATGAACCTTTGGCAAAACGTAGAAAGCGACTAATTAAAAGCCACACTGATACTGGACCCTTGTCTGGTCTACATTCTGTGGCGCACATGGCTGTGACTAAGACTGAAGATGCAAGTGACAGTGATGGTGATGATAACGCTGATGATCCTGAACCGAGTTTTGTTTCGGTTGGAACAGATGATGGCCAACAACCAGGTCCATCTGGTTTGGGAAAAGCTTCAACGGACATACCGATGGAAGACGCCGAAGTCGAAAATAAGACATGCCTGAAGTGTAGCAAAACTTACTCGACTAGAAGAGCATTTACCCGACATCGCCTACGTTGCAACAAGGAAAAAACAATTGCTTGTGAGATGTGCCATAAGAAATTTAAATCAAAGCACGAGATGAGTCAGCACGTGCGAGCTATCCACAGCGAGTACAAAGCCGTATTTACCTGTGAAATATGCGACGCATTCTTTTACACGAAAGCTACTTATGACCGCCATCAATATAAACATTTAAACTCGTTCCGCTTTAAATGCGATGAATGTGGAGAGAAGTACAATATTAAAGCTAGTCTAGATCACCATATAGCTTTGAAACACAAAGGCATACGATATACATGCGAGCAATGTGGAAAGTCATTTGCAACAGAAAGTTACTTTAAGAAACACGCCGACACCCACAGGGAAGATTATGTTTGTCCTGAATATAAATGCACTATATGCGACAAGGTTTATAACCGCAGAAGTTCATTAGCAATGCATATGCACACCCATCGGAACCCCTATTATGTCTGCGAAGTGTGTGGTAAAGCTGTTTGCTCCAAAACGAGTTTGAGGCAGCATGTTATGCTGCACACGGGAGAGAAGCCGTTTACTTGTGAGATTTGTGGAAGGTCTTtcaataaacaaacaatttgGAAGAGTCACATGAGAACGCATACCAAAAGCAAAccatttgtatgcaatatatgCGAAAAGGGCTTTTCACAACGAACGCCTCTCACTGTGCACATGAGATATCACACGGGAGAAAAGCCTTATTCTTGCGATATATGCCAAAAACGGTTTTTTACTCGGACACTGTTAAAATCCCATTCGAAAATCCATGGCATTCCACTTTCTAGTATTTAA
Protein Sequence: MVSIMEIMQLCRLCLVKEQVNIPIFEQPGDIREVFLKISACLPVKVSKEDKLPKKICDGCSYKLDLLYQFSNTCANAEKQLLTWLNQLNSDTMKEDADIAHQTQTSQPHPVKQEMLDIADNGNDTANSEYLLQQQFEGSDLAAVESHDENGGGDDGGGDDSSDDEPLAKRRKRLIKSHTDTGPLSGLHSVAHMAVTKTEDASDSDGDDNADDPEPSFVSVGTDDGQQPGPSGLGKASTDIPMEDAEVENKTCLKCSKTYSTRRAFTRHRLRCNKEKTIACEMCHKKFKSKHEMSQHVRAIHSEYKAVFTCEICDAFFYTKATYDRHQYKHLNSFRFKCDECGEKYNIKASLDHHIALKHKGIRYTCEQCGKSFATESYFKKHADTHREDYVCPEYKCTICDKVYNRRSSLAMHMHTHRNPYYVCEVCGKAVCSKTSLRQHVMLHTGEKPFTCEICGRSFNKQTIWKSHMRTHTKSKPFVCNICEKGFSQRTPLTVHMRYHTGEKPYSCDICQKRFFTRTLLKSHSKIHGIPLSSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -