Asti036519.1
Basic Information
- Insect
- Aphodius sticticus
- Gene Symbol
- -
- Assembly
- GCA_963966075.1
- Location
- OZ014512.1:45165952-45167453[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3e-05 0.0023 19.7 0.6 2 23 197 218 196 218 0.98 2 9 0.00037 0.029 16.2 0.3 2 23 241 262 240 262 0.97 3 9 1.9e-05 0.0014 20.3 2.3 1 23 280 302 280 302 0.98 4 9 0.00081 0.062 15.2 2.0 1 23 305 327 305 327 0.99 5 9 1.7e-07 1.3e-05 26.7 0.6 1 23 333 356 333 356 0.98 6 9 0.0036 0.27 13.2 0.1 1 23 362 385 362 385 0.94 7 9 0.00089 0.069 15.1 2.3 1 21 392 412 392 414 0.95 8 9 4e-06 0.00031 22.4 0.7 1 23 420 442 420 442 0.96 9 9 6.8e-07 5.2e-05 24.9 0.5 1 22 448 469 448 469 0.96
Sequence Information
- Coding Sequence
- ATGTCGAACATTTGCCGATTATGCTTACAGTCGCACTCAGAAAAGTACTACCGTATGGATACAGATGACTATCGACACAAAATGCAATCAGTAATACCAGAAATTGATATTACCGTAGTGGAGCAGCCGTTTATATGCTTAAAATGCTCAGAATTCTTGTTAAGCGCATATTCTTTCAAAAGCAATTGTATACATACAGATAAAGAATTAAAAAGATACTTAAAAGAAGACGGAAGGCGGATAAACTTAGAAGATTTTTTAAGGCAGAAAAACGAAGATTTATTGAGTAATATAAAAATGGAGACTGTTGAATATTGCGTGCAGGACATAAGATTAGACGAAGAAGTATCAGAAAAGACACGAGAAGACGGCTGTACCGCTGGTAACCTTGCTGAAGTTGTTTTCGTAGATATTCTTCAGATAACAAATAATCTTCAAGAGGAGGGTGAAGTAGAAACGGATATCCAGGAAATAAGCATAAGCAAAACATTGATAGACAAAGAAAACGAGAAGAAAATAACGGATGAAAACGTGGCAGAAAGTACAGTTTGCAAACAAACCTCgaacacaaataaatatcggGTAAATAAATGCCcgatatgtaaaaaaatatttttacgtaaaaGTGCCTTAGAGATCCACCTTAGGAGACATAACCATGAGAAAGCAGCCGAAAATGGCGGTACTATATACACACAGAACCCCAAAATTCTAGTCAATAAATGTCCGGTCTGTAAGAaagtatttctacaaaaaagtgGCTTGGAGGCACATGTTACCAGGCACAAACATGATAAGCCACCGGAGAAGGATATACAAACTCCAAAGATACAAGTACATAAATGTGAGATatgtagaaaagtatttttccgTAAAAGTGGTTTAGAGGGACATATCAAAAGGCATGAACGTTACAAATGTACCATTTGCAACAAATTTACGCCTTGTAAAGGCTCGTTAGAGGAACATATGCGTGTTCACACTGGAGAACGTCCATTTCAATGCACAGATTGCGGAAAAGCTTTTGCGCAGAAAAGTACTCTATATACCCATGTTCGGAGTGTACACATGTCAGAAAGGCCTTTTATCTGTGAAATATGCGGCATGGGTTTTGCAGTTCGAGGTGCCTATACAGCTCATAAGAACCAACGGCACAACAATCTGGAAAAGAAATTTATTTGTAAGTTTTGTGGGAAGGCATATATTGTTAACAGTAGATTAGAAAGGCATATGAAATGTCACACTGGGGAGAAAAATTATTTGTGTCAGGTCTGCAGTAAACGTTTTGTTGATAACGCAAGCTTGAAAAAACATTTACGGATACATAATGGCGACAAACCTTACGAGTGCCCTATTTGCCAGAAATCGTTCACTCAAAATTACAATATGAAAATACATCTTAGGTCTTGTGAAAGAAGAAATGGTCAGACTGGTGACACAAGTAAATGa
- Protein Sequence
- MSNICRLCLQSHSEKYYRMDTDDYRHKMQSVIPEIDITVVEQPFICLKCSEFLLSAYSFKSNCIHTDKELKRYLKEDGRRINLEDFLRQKNEDLLSNIKMETVEYCVQDIRLDEEVSEKTREDGCTAGNLAEVVFVDILQITNNLQEEGEVETDIQEISISKTLIDKENEKKITDENVAESTVCKQTSNTNKYRVNKCPICKKIFLRKSALEIHLRRHNHEKAAENGGTIYTQNPKILVNKCPVCKKVFLQKSGLEAHVTRHKHDKPPEKDIQTPKIQVHKCEICRKVFFRKSGLEGHIKRHERYKCTICNKFTPCKGSLEEHMRVHTGERPFQCTDCGKAFAQKSTLYTHVRSVHMSERPFICEICGMGFAVRGAYTAHKNQRHNNLEKKFICKFCGKAYIVNSRLERHMKCHTGEKNYLCQVCSKRFVDNASLKKHLRIHNGDKPYECPICQKSFTQNYNMKIHLRSCERRNGQTGDTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -