Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014509.1:68481335-68492418[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0064 0.49 12.4 0.4 1 20 127 146 127 149 0.93

2 18 0.072 5.6 9.0 0.7 1 23 160 182 160 182 0.98

3 18 0.31 24 7.0 1.5 2 23 189 210 188 210 0.96

4 18 0.011 0.84 11.6 1.6 1 23 216 238 216 238 0.96

5 18 0.013 1 11.4 1.8 1 23 272 294 272 294 0.97

6 18 0.016 1.2 11.1 1.5 1 23 325 347 325 347 0.99

7 18 0.0018 0.14 14.1 0.9 1 22 372 393 372 393 0.95

8 18 0.0015 0.12 14.3 0.4 1 20 523 542 523 545 0.93

9 18 0.11 8.2 8.5 0.3 1 23 554 576 554 576 0.98

10 18 0.051 3.9 9.5 1.3 2 23 583 604 582 604 0.97

11 18 0.00043 0.033 16.1 0.9 1 23 610 632 610 632 0.98

12 18 6.6 5.1e+02 2.9 0.8 12 23 829 840 827 840 0.91

13 18 0.00076 0.059 15.3 1.2 1 23 846 868 846 868 0.96

14 18 0.16 12 7.9 0.1 1 23 874 896 874 896 0.98

15 18 1.3e-06 0.0001 23.9 0.6 1 23 902 924 902 924 0.99

16 18 0.00082 0.063 15.2 5.0 1 23 930 952 930 952 0.98

17 18 0.0015 0.12 14.3 0.2 1 23 958 980 958 980 0.98

18 18 2.5e-05 0.0019 19.9 0.3 1 23 986 1008 986 1008 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0064	0.49	12.4	0.4	1	20	127	146	127	149	0.93
2	18	0.072	5.6	9.0	0.7	1	23	160	182	160	182	0.98
3	18	0.31	24	7.0	1.5	2	23	189	210	188	210	0.96
4	18	0.011	0.84	11.6	1.6	1	23	216	238	216	238	0.96
5	18	0.013	1	11.4	1.8	1	23	272	294	272	294	0.97
6	18	0.016	1.2	11.1	1.5	1	23	325	347	325	347	0.99
7	18	0.0018	0.14	14.1	0.9	1	22	372	393	372	393	0.95
8	18	0.0015	0.12	14.3	0.4	1	20	523	542	523	545	0.93
9	18	0.11	8.2	8.5	0.3	1	23	554	576	554	576	0.98
10	18	0.051	3.9	9.5	1.3	2	23	583	604	582	604	0.97
11	18	0.00043	0.033	16.1	0.9	1	23	610	632	610	632	0.98
12	18	6.6	5.1e+02	2.9	0.8	12	23	829	840	827	840	0.91
13	18	0.00076	0.059	15.3	1.2	1	23	846	868	846	868	0.96
14	18	0.16	12	7.9	0.1	1	23	874	896	874	896	0.98
15	18	1.3e-06	0.0001	23.9	0.6	1	23	902	924	902	924	0.99
16	18	0.00082	0.063	15.2	5.0	1	23	930	952	930	952	0.98
17	18	0.0015	0.12	14.3	0.2	1	23	958	980	958	980	0.98
18	18	2.5e-05	0.0019	19.9	0.3	1	23	986	1008	986	1008	0.99

Sequence Information

Coding Sequence: ATGAATTCAGAATTTTCCACAACAGAAGATCATCCAGAAAATCAATCAGATTTACATAGCCAGGACAATTTTGCTTTTGTCGAATGCTCAAAAAGTGTACCCGATGTAGGGTTTGTAGATGCTCAAGTCAAGTCGGAACCTTTTTATGATTTTAATGATGTTTCGGACAATTTTGAAGCTGGCATACATAATACAGAGATAAAACATGAACAGGATATAAAAATTGAAGAGACGATAGTTAAGAATGAGCTTAATGgtagTACCTATGATGATAGTTGTGCATTCACTGATGCAACTAATTCTTTAACAtcggaaataaaaattaaagaggAGAAGTCTGCCTTGGAAAATGTAGGTGCGAAACTAAGCAGGAAATATTACACGTGCACTGTGTGCGATTATGAAACTACATCGTTATATGACCTTAGAATGCATATACCAAAACATGCACGAACACGCACGAAGGAGGTACGACCGTATAAATGTTCTATGTGTCAGTATGCTGGTTTAACAATGAGCAAGCTCGAAGAGCATATGAAAACGCATCCGCAAAAAATACAGTCAAAGTGCACCTTGTGCGAATACGCAACCACGAACTCTATGAACTTTAAGTTCCATATGAAAGCCCATACATGGGAAAGGTCCCATAAATGCATTATATGTGGGTTTGCAGCTACAACACTTTACCATCTTAGAGTGCATATGATAACCCATACAGGGAGGACgtcatataaatattataagtaTGAGTATGCAGGATTAACAAAAGGCATGGTCGATGAGGATATGAAGACGCAACCACAAGTAAAACACCATATGTGTACCGTGTGTCCATACACAACCACCAACTCTATAATCCTTAAGAGCCATATGAAAACCCATACAGggaaaatatataataagtatgaGTGTGCAGGTTTAACACAAGCCATGATCAATGGGCATATGAAAACTCAGCCACAAGTAAAACACTATAGGTGTAGCTTGTGTACATACGCAACCACAAACTATGAAATCCTTAAGAGCCATATGAAAACCCATACAGGGGAAATCAGAATTGACGAGGAGAATTTTTCCACGGAAAAAGTAGATGAGGAATCAACCCAGAAATGTCACACATGTAACGTGTGTGAATACACAACTACAACATCAAATGAACTTAAAATGCATATGAGTACATACACATGCAGtATGAATTCAGAATTTTCCACTACAGAAGATCATCTAGGAAATCAATCAAATTTGCAAAGCCAGGACGGTTTTGCTTTTGTCGAATGCTCAAAAAGTGTACCCGATGTAGAGTTTGTAGATATTCGAGTCAAGTCGGAACCGTCTTATGATATTACTGATGTTTCGGAAATTTTTGACGCTGGAAAACGTAATACGGAGATAAAACATGAACAGGAAAtaaaagttgaagagataataGTTAAGAATGAGCTAAATCgtaataCCGATGATGATAGTTGTGCACTCATTGACGCAACTAATTCTTCAACGTCGGAAATAAGAATTGAAGAGAAGTCTGCCTTGGAAAATGTAGGTGTCAAAGTAAGCCGGAAATATTACACGTGTAGTGTGTGCGATTATGCAACTACATCGTCGTATGACCTTAGAATGCATATACCAAAACATAGACGCACGAAGGAGGTACGACCGTATAAATGTTCTATCTGTCAGTATGCTGGTTTAACAATGGGCAAGCTTGAAGAGCATATGAAAACGCATCCGCTAGATATACAGTCGAAGTGCACCTTGTGCGAATATACATCCACAAACGCTACGAACCTCAAGTTCCATATGAAAGCCCATACGGGGGAAAGGTCCTATAAATGCATTATCTGTGGGTTTGCAGCTACAAAACCTTACCATCTTAAAGTGCATATGAGAacccatacaggagagaaatataaatttaagtatGCAGGTTTAACAAAAGGCATAGTCAATGAGCATATGAAACCGGATACACAACTAATACACCATAGGTGTACCTTGTGTGCATATGGAACCACAAATTCTGAAATCCTTAAGTGCCATATGAAACTCCATACAGGGAATATCAGAATTGACGAGGAGAATTGCGCCAGGAAGGTTGTAAATGTGGAATCAAGCCAGAAATGTTACACGTATTTATTCTGCATCAACTATCAAGATATTATTAAAGTCCTGTCGTCCGATATTCCACAAGTTATAATTAATACGTTGCATATATTTGGCAGCATGAGTTCAGAGTTTTTCACAACAGACGATCAACCAGGAACTCAATCAAATTTATATAGCCAGGACGGTTTTGCTTTTGTCGAATGCTCAAAAAGTGTACCCGATGTAGAGTTTGTAGATACTCAAGTCAAGTCGGAACCTTTTTATGATTTTAATGATGATTCGGACAAGTTAGATGGTGCCAAACGTAATAAGGAGATAAAACATGAACAGGATATAAAAATTGAAGAGACTATAGTTAAGAATGAGCTTAATGGTGCGTCATCGCATTATCTCAAACTGCACATGCAAACACATACAGGGAACAAACCACACGCTTGCGCTATATGCGAATACGCTACCACGACGTCGAACAAGCTAAAAATACACATGCGAAAGCATTCCGGGGAGAAACCGTACACATGTAGCGTATGCGAATACGCTGGTGCGTCATCGAACATACTTAAACTCCATATGCGTCAACACACAGGCCAGAAACCGTATAAATGTAACATCTGTGACTATGCTTCTACAACGGCTTCACTTTTAAAGGTGCATATGAGAAAACATTCAGGGGAAAGTCCGTATAATTGTACGATGTGCGAACACGCTTGTCGTACGAAGGGTAACCTTAAGTTGCATATGCAAAGGCATACAGGGGAGAAACGATATATGTGTAGCGTGTGTGAGTACGCAGGCGCTAGTGCGAGTAGACTTAAAACGCACATGCGATCGCATACGGGGGAGAGGCCTTATAAGTGTAGTGTTTGTGAGTACGCTGCTACGCAAACTTCAAATCTTAAAGTGCATATGAGAATACATGATCCGGAGAAAAAAAGCCGTAGAAATATGGAAAGTTGTAGTGTTGAAGATGCTGAAGTTTCGTATGGAAATACATCCGTAGAAGAAGAGAAGTGA
Protein Sequence: MNSEFSTTEDHPENQSDLHSQDNFAFVECSKSVPDVGFVDAQVKSEPFYDFNDVSDNFEAGIHNTEIKHEQDIKIEETIVKNELNGSTYDDSCAFTDATNSLTSEIKIKEEKSALENVGAKLSRKYYTCTVCDYETTSLYDLRMHIPKHARTRTKEVRPYKCSMCQYAGLTMSKLEEHMKTHPQKIQSKCTLCEYATTNSMNFKFHMKAHTWERSHKCIICGFAATTLYHLRVHMITHTGRTSYKYYKYEYAGLTKGMVDEDMKTQPQVKHHMCTVCPYTTTNSIILKSHMKTHTGKIYNKYECAGLTQAMINGHMKTQPQVKHYRCSLCTYATTNYEILKSHMKTHTGEIRIDEENFSTEKVDEESTQKCHTCNVCEYTTTTSNELKMHMSTYTCSMNSEFSTTEDHLGNQSNLQSQDGFAFVECSKSVPDVEFVDIRVKSEPSYDITDVSEIFDAGKRNTEIKHEQEIKVEEIIVKNELNRNTDDDSCALIDATNSSTSEIRIEEKSALENVGVKVSRKYYTCSVCDYATTSSYDLRMHIPKHRRTKEVRPYKCSICQYAGLTMGKLEEHMKTHPLDIQSKCTLCEYTSTNATNLKFHMKAHTGERSYKCIICGFAATKPYHLKVHMRTHTGEKYKFKYAGLTKGIVNEHMKPDTQLIHHRCTLCAYGTTNSEILKCHMKLHTGNIRIDEENCARKVVNVESSQKCYTYLFCINYQDIIKVLSSDIPQVIINTLHIFGSMSSEFFTTDDQPGTQSNLYSQDGFAFVECSKSVPDVEFVDTQVKSEPFYDFNDDSDKLDGAKRNKEIKHEQDIKIEETIVKNELNGASSHYLKLHMQTHTGNKPHACAICEYATTTSNKLKIHMRKHSGEKPYTCSVCEYAGASSNILKLHMRQHTGQKPYKCNICDYASTTASLLKVHMRKHSGESPYNCTMCEHACRTKGNLKLHMQRHTGEKRYMCSVCEYAGASASRLKTHMRSHTGERPYKCSVCEYAATQTSNLKVHMRIHDPEKKSRRNMESCSVEDAEVSYGNTSVEEEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -