Asti042986.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014514.1:34908824-34918743[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.033 2.5 10.1 3.6 1 23 229 251 229 251 0.96
2 13 0.056 4.3 9.4 0.1 3 23 258 277 257 277 0.98
3 13 6.3e-06 0.00048 21.8 0.3 1 23 283 305 283 305 0.99
4 13 0.00048 0.037 15.9 4.6 1 23 311 333 311 333 0.98
5 13 0.00023 0.018 16.9 1.3 1 23 339 361 339 361 0.98
6 13 0.001 0.078 14.9 2.3 2 23 368 389 367 389 0.97
7 13 0.067 5.2 9.1 4.1 1 23 627 649 627 649 0.96
8 13 3.8e-05 0.0029 19.4 0.9 3 23 656 676 655 676 0.99
9 13 2e-05 0.0016 20.2 0.4 1 23 682 704 682 704 0.99
10 13 0.0039 0.3 13.0 0.3 1 23 710 732 710 732 0.98
11 13 0.00015 0.011 17.5 1.1 1 23 738 760 738 760 0.97
12 13 0.018 1.4 10.9 5.6 2 23 767 788 766 788 0.97
13 13 4.1e-05 0.0031 19.3 3.3 1 23 794 816 794 816 0.99

Sequence Information

Coding Sequence
ATGCCTACGGCAAAGCATGTAGTGGGAAAACTCAATGTGTATATTTGTCGAATGCCGTCAAAAATCTACGAACGTTATCTTTTCCGTCTGACGAAGCAAGAACCGGgggaaaattttgaaaacttcTTGCTTCGTCTTAGAAACCAAAGCGCAAAGTGCCAGTTTAAAGATGCCAATGAACATCTAATAGATCAAATTGTTGAAAAGTGCATTTCGGTTGAGCTCAGACAAAAAGTCCTTGCAGCTGACGATACGATCAACCTTACTGGAATTATTTCGGAAGCCAAGTCTTTGGAAACGGTTAATCTGCAGACACAGGGTTATGTTCTACAACAGCAAAATACATTGGATACGAATCATATTAATTTTAGCAAGGATGTTAAGAATTCTGTTGGCATGCTGGCTGTGGACACAACTACTCGTAAAAATATACCCTGCGACAAGGAGAGCAATAGTATGGAATTATCTGACAAGCCTACGATAACCAAACCAACGTGCGACCTAAAGGTGGAGTTCGACGAAACTAGTATTTCAGGATCTACTTGCGCAGTACCTGGACAATCTATTGAGCCGACGAAGACAGAAACACTATCGCAAGTAATCCGATCAATCGACCACGACTACGCAGCTACGCCGACAACGCAACCTGAAGAGCATGCGAAACAACCCAAGGAAGAGAAGCAGTTCAAGTGCAACCTTTGTGACTATGCTACTACGCAACGTAGATACCTACACGAGCATAAGGTGCGGCATCAAAAACCAAAATTGCTGTGCCCGGTATGCGGATTTACCTCATCGGCTTCTAGCATGAATGTGCATATGCTAAGGCATACAGGGGAAAAACCCTTCAAATGTTCGATTTGTGGTTACGCTGGCACCAGTAGTAGTACTTTTACAGCGCACATGAGAATTCATACCGGGGAGAAGCCTTTCAGTTGCTCGGTTTGTGATTATCGTTCTGCTCACCGTCATAATCTTGTTACGCATATGAGACGGCATACGGGAGAGAAGCCGTACAAATGCTCGATTTGTAGTTTTAGTTGCGCAAAAAGCGGTGGTCTTAAAGTGCATATGAGAGGGCATACTGGGGAACGGCCATTGAAATGTTCGCTCTGTGATTATGCTTGTAAAGATTACGGTAATCTTAAGATACATAAGAGAAATCATACAGatttgagaaaattacaaaagaaaatgccTACGGGAGAGAATGTAGTGGGTACACTGACCGTGTATTTTTGTCGAATGCCGTCAAAAATATATGAACGCTATCTTTTCCGTCGGACGAAGCAAGAACCGGgggaaaattttgaaaacttcTTGCTTCGTCTCAGAAACCAAAGCGCAAAGTGCCAATTTTTAGATGCCGAGGAACATCTAATAGATCAAATCGTTGAAAAGTGCAGCTCCGTTGAGCTCAGACAAAAAATCCTTGCAGCTGACGATACGATCAACCTTACTGGAATTATTGCGGAAGCCAAGTCTTTGGAAACGGTTAATCTGCAGACACAGGGTTATGTTCTACAACAGCAAAATACATTGGATACGAATCATATTAATTTTAGCAAGGATGTTAAGAAATCTGTAGACATGCTGGCTGTGGACACAACTACTCGTAAAAATATACCCTGCGACAAGGACAGCAATAGTATGGAATTATCTGACGAGCCTACGATAACCAAACCAACGTGCGACCTAAAGGTGGAGTTCGACGAAACTAGTATTTCAGGATCTACTTGCGCAGTACCTGGACAATCTATTGAACCAACGAAGACGGAAACACTATCGCAAGTAATCCGATCAATCGACCACGACTACGCAGGTACGCCGACAACGCAACCTGAAGAGCACGCGAAACAACCCAAGGAAGAGAAGCAGTTTAAGTGTAACCTTTGTAACTACGCTACTACGCAACGTAGATACCTACACGAGCATAAGGTGCGGCATCAAAAGCAAAAATTGCTGTGCTCGACATGCGGTTATACCTCTACATCGCCTTCCAACATGAAAGTGCATATGCGAAGGCATACGGGCGAAAAGCCGTTCAAATGTTCGATTTGTGATTACGCTGGCGCCAATAGTAGTACTTTTACAGCGCATATGAGACGTCATACCGGGGAGAAACCTTTCATTTGCTCGATTTGCGATTATCGTTCTGCTTACCGTCAAGATCTTGCCCTGCATGTGAGACGGCATAGGGGAGAAAAGCCGTACAAATGCTCGGTTTGTGGATATAGTTGTGCGACGAATGGTCGTCTTAAAGTGCATATGACGGGGCATACTGGCGAGCGGCCATTGAAATGTTCCCTCTGTGATTATGCTTGTAGAGACTACTGTAGTCTTAAGATGCATACAAGAACTCATACCGGCGAGAGGCCATACAAATGTTCGGTTTGTGAATTTACTTGTTCACAAAATGGTACTCTTAAAGTGCATATGAGAAGGCATAGCGGAGAGAATGGATTGAATTGA
Protein Sequence
MPTAKHVVGKLNVYICRMPSKIYERYLFRLTKQEPGENFENFLLRLRNQSAKCQFKDANEHLIDQIVEKCISVELRQKVLAADDTINLTGIISEAKSLETVNLQTQGYVLQQQNTLDTNHINFSKDVKNSVGMLAVDTTTRKNIPCDKESNSMELSDKPTITKPTCDLKVEFDETSISGSTCAVPGQSIEPTKTETLSQVIRSIDHDYAATPTTQPEEHAKQPKEEKQFKCNLCDYATTQRRYLHEHKVRHQKPKLLCPVCGFTSSASSMNVHMLRHTGEKPFKCSICGYAGTSSSTFTAHMRIHTGEKPFSCSVCDYRSAHRHNLVTHMRRHTGEKPYKCSICSFSCAKSGGLKVHMRGHTGERPLKCSLCDYACKDYGNLKIHKRNHTDLRKLQKKMPTGENVVGTLTVYFCRMPSKIYERYLFRRTKQEPGENFENFLLRLRNQSAKCQFLDAEEHLIDQIVEKCSSVELRQKILAADDTINLTGIIAEAKSLETVNLQTQGYVLQQQNTLDTNHINFSKDVKKSVDMLAVDTTTRKNIPCDKDSNSMELSDEPTITKPTCDLKVEFDETSISGSTCAVPGQSIEPTKTETLSQVIRSIDHDYAGTPTTQPEEHAKQPKEEKQFKCNLCNYATTQRRYLHEHKVRHQKQKLLCSTCGYTSTSPSNMKVHMRRHTGEKPFKCSICDYAGANSSTFTAHMRRHTGEKPFICSICDYRSAYRQDLALHVRRHRGEKPYKCSVCGYSCATNGRLKVHMTGHTGERPLKCSLCDYACRDYCSLKMHTRTHTGERPYKCSVCEFTCSQNGTLKVHMRRHSGENGLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-