Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014514.1:34941996-34946849[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00074 0.057 15.3 4.2 1 23 225 248 225 248 0.97

2 11 0.00011 0.0087 17.9 1.0 1 23 281 303 281 303 0.95

3 11 0.0068 0.52 12.3 0.2 1 23 309 331 309 331 0.99

4 11 0.0011 0.081 14.8 3.6 1 23 337 359 337 359 0.97

5 11 3.5e-05 0.0027 19.5 0.6 1 23 365 387 365 387 0.99

6 11 0.00049 0.038 15.9 0.2 1 23 393 415 393 415 0.99

7 11 5.1e-06 0.00039 22.1 3.0 1 23 421 443 421 443 0.99

8 11 2e-06 0.00015 23.4 0.7 1 23 449 471 449 471 0.98

9 11 0.00019 0.015 17.2 4.6 1 23 477 499 477 499 0.98

10 11 2.9e-05 0.0022 19.7 0.9 1 23 505 527 505 527 0.99

11 11 7.1e-05 0.0055 18.5 2.8 1 23 533 555 533 555 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00074	0.057	15.3	4.2	1	23	225	248	225	248	0.97
2	11	0.00011	0.0087	17.9	1.0	1	23	281	303	281	303	0.95
3	11	0.0068	0.52	12.3	0.2	1	23	309	331	309	331	0.99
4	11	0.0011	0.081	14.8	3.6	1	23	337	359	337	359	0.97
5	11	3.5e-05	0.0027	19.5	0.6	1	23	365	387	365	387	0.99
6	11	0.00049	0.038	15.9	0.2	1	23	393	415	393	415	0.99
7	11	5.1e-06	0.00039	22.1	3.0	1	23	421	443	421	443	0.99
8	11	2e-06	0.00015	23.4	0.7	1	23	449	471	449	471	0.98
9	11	0.00019	0.015	17.2	4.6	1	23	477	499	477	499	0.98
10	11	2.9e-05	0.0022	19.7	0.9	1	23	505	527	505	527	0.99
11	11	7.1e-05	0.0055	18.5	2.8	1	23	533	555	533	555	0.99

Sequence Information

Coding Sequence: ATGACTACCTTGAACCAAACAGTGTGTAAGCGCGAGTACTTTTGTCCGAAGCCGTCTAAAATCTTCGAACGTCATCGTTTCCGGCTGACAAAGCAAGAGCCGGGAGAAAAATTCCAAAACTTTTTGGTTCGTCTTCGAAATCAAAGTATGAAGTGCCAATTTAAAGATACCGAGGAACATTTAATCGATCAAATCGTAGAAAAGTGCAGCTCAATTGAACTCAGGCAGAAAATCCTTGCTATTGGTGATACTATCAACCTTATTGGAATTATTGCAGAGGCCTACGCTTTAGAAATAGTTAACCTAGAAGGCTTTGTTGAACAGAAACCAGATATTTTAGATGTGAATCATATTACCTTCAGTAAGGATGTTGTGAACCCCGTTAATAGGCTGGCTGTGGATTCAACTACTTATAAAAATATACCCTGTGAGGAGAGGAATTGCTTGGAATTAATTGATAACCAAGCAATAACCAATCCAATGCACGACTTAAAGATGGAATTTAGTGAAACTAGTATCTCGGGCTCCGCTTGTACTTCACCCGGACAATCTATTGAACCAACGAAGATGGAAACACAATCGCAAGTCTACAGAGCAATCGAACACAACGACGCAGCTGCTCAAACAACGCAACCTAAAGAGCAAACGGAAGAAGACAAGGAAGAGAAGCATTTCAAGTGCAACATTTGTGGCTTTGCTACTACGCAACGTAGATACCTAAATCAACACCAACATCGACGACATCCCACACAGAAATCATCCGACTGTAACCCTTCCGCCGTTTCAACCGTCTCCTCGGGAGAATCGAAAAATCGCAAGGCCCCGCGGGCCAGAAAAAACTATCTATGCGTTTCATGCGGATATACCTGTTCATCACCATCCCTCCTGAAAGTGCATATGCTAAGGCATACCGGAGAAAAGCCTTTTAAATGTTCGGTTTGTGATTATGCTTCTATAGAACGTCGTGTCGTCACGGcacatatgagaacgcataccggGGAGAAACCTTTCGCTTGCTCGGTTTGCGATTATCGTACGGCACACCACAGTAATGTCCGGCTGCATATGAGAAGACATACTGGAACGAAGCCATTCAAATGTTTGATTTGCGACTACGCATCTTCGCAAAGTGGCGGGCTTAAAACGCATATGAAACGTCACACCGGCGAACGACCATTTAAATGTTCCGTCTGCGACTTTGCTTCTACACAAACCGCCGGTCTTGCGATGCATATGAAGACTCACACTGGAGAAAATCGATTTAAATGCGGCGAATGTAAGTTTGCTTGTAAACAGAAATCCAATCTCGTagtgcatatgagaacgcatactggCGAGAAGCCGTTTGAATGTTCCGTATGTGACAAAGCTTTTAGAAGGCGTGAAAGGCTTATAGTGCATACGAGAACGCACACTGGCGAGAAGCCTTTCAAATGTTCGATTTGTCGTTTTGTATGTAGACAACGTGATAGTCTTAAACTGCATATGAGGCAGCATACGGGCGAGAAACCGTTTCGGTGCAGCCGATGTGATTTTGCTAGTAAAAATAGGGGTAACCTTGTagtgcatatgagaacgcatacaggagcgAAGCCTTTCAAATGTTCGGTTTGTGAATTTACTAGTTCGCAAAGAAGTAGTGTTAAAAGACATATGAGAAGGCATAGCGGTGAGAATTCACTGAAATGA
Protein Sequence: MTTLNQTVCKREYFCPKPSKIFERHRFRLTKQEPGEKFQNFLVRLRNQSMKCQFKDTEEHLIDQIVEKCSSIELRQKILAIGDTINLIGIIAEAYALEIVNLEGFVEQKPDILDVNHITFSKDVVNPVNRLAVDSTTYKNIPCEERNCLELIDNQAITNPMHDLKMEFSETSISGSACTSPGQSIEPTKMETQSQVYRAIEHNDAAAQTTQPKEQTEEDKEEKHFKCNICGFATTQRRYLNQHQHRRHPTQKSSDCNPSAVSTVSSGESKNRKAPRARKNYLCVSCGYTCSSPSLLKVHMLRHTGEKPFKCSVCDYASIERRVVTAHMRTHTGEKPFACSVCDYRTAHHSNVRLHMRRHTGTKPFKCLICDYASSQSGGLKTHMKRHTGERPFKCSVCDFASTQTAGLAMHMKTHTGENRFKCGECKFACKQKSNLVVHMRTHTGEKPFECSVCDKAFRRRERLIVHTRTHTGEKPFKCSICRFVCRQRDSLKLHMRQHTGEKPFRCSRCDFASKNRGNLVVHMRTHTGAKPFKCSVCEFTSSQRSSVKRHMRRHSGENSLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -